RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 RFESDQ8TAC1 157 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 APH1BQ8WW43 257 aa11.84□□□□□ -0.51
CLN3-222ENST00000566083 MRPS24Q96EL2 167 aaKnown RBP11.84□□□□□ -0.51
CLN3-222ENST00000566083 EXOSC1Q9Y3B2 195 aaKnown RBP11.84□□□□□ -0.51
CLN3-222ENST00000566083 SERPINE3A8MV23 424 aa11.83□□□□□ -0.52
CLN3-222ENST00000566083 HSD17B6O14756 317 aa11.83□□□□□ -0.52
CLN3-222ENST00000566083 OGG1O15527 345 aa11.83□□□□□ -0.52
CLN3-222ENST00000566083 EBI3Q14213 229 aa11.83□□□□□ -0.52
CLN3-222ENST00000566083 LINC00311Q8N616 119 aa11.83□□□□□ -0.52
CLN3-222ENST00000566083 C5orf56Q8N8D9 126 aa11.83□□□□□ -0.52
CLN3-222ENST00000566083 SETD9Q8NE22 299 aa11.83□□□□□ -0.52
CLN3-222ENST00000566083 PLPPR1Q8TBJ4 325 aa11.83□□□□□ -0.52
CLN3-222ENST00000566083 RGP1Q92546 391 aaPredicted RBP11.83□□□□□ -0.52
CLN3-222ENST00000566083 DIMT1Q9UNQ2 313 aaKnown RBP11.83□□□□□ -0.52
CLN3-222ENST00000566083 TXNL1O43396 289 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 WBP4O75554 376 aaKnown RBP11.82□□□□□ -0.52
CLN3-222ENST00000566083 GPX5O75715 221 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 CDRT1O95170 752 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 IGKV1D-33P01593 117 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 IGKV1-33P01594 117 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 IGHG2P01859 326 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 SSTR5P35346 364 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 GNG10P50151 68 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 LTC4SQ16873 150 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 YIF1BQ5BJH7 314 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 ATAD3CQ5T2N8 411 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 TTC23Q5W5X9 447 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 SLC35E3Q7Z769 313 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 CDH26Q8IXH8 852 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 OR2T10Q8NGZ9 312 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 NEK7Q8TDX7 302 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 ARL11Q969Q4 196 aa11.82□□□□□ -0.52
CLN3-222ENST00000566083 IGHV1-3A0A0C4DH29 117 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 EBAG9O00559 213 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 GEMIN2O14893 280 aaKnown RBP11.81□□□□□ -0.52
CLN3-222ENST00000566083 CA11O75493 328 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 MPIG6BO95866 241 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 IGHV3-7P01780 117 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 SERPINA2P20848 420 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 ETV1P50549 477 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 GP2P55259 537 aaKnown RBP11.81□□□□□ -0.52
CLN3-222ENST00000566083 TAS2R43P59537 309 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 RPL23AP62750 156 aaKnown RBP11.81□□□□□ -0.52
CLN3-222ENST00000566083 Q499Y3 187 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 TRAT1Q6PIZ9 186 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 MOB3BQ86TA1 216 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 TGIF2LXQ8IUE1 241 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 IZUMO1Q8IYV9 350 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 OR8H1Q8NGG4 311 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 THRSPQ92748 146 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 LEAP2Q969E1 77 aa11.81□□□□□ -0.52
CLN3-222ENST00000566083 ZNF184Q99676 751 aaPredicted RBP11.81□□□□□ -0.52
CLN3-222ENST00000566083 LIN7CQ9NUP9 197 aaKnown RBP11.81□□□□□ -0.52
CLN3-222ENST00000566083 TRBV5-5A0A0J9YX44 114 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 SH2D7A6NKC9 451 aaPredicted RBP11.8□□□□□ -0.52
CLN3-222ENST00000566083 MCRIP1C9JLW8 97 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 AIPO00170 330 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 AP4M1O00189 453 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 SDCBPO00560 298 aaPredicted RBP11.8□□□□□ -0.52
CLN3-222ENST00000566083 SPINT2O43291 252 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 BAG2O95816 211 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 IGFBP3P17936 291 aaPredicted RBP11.8□□□□□ -0.52
CLN3-222ENST00000566083 FSTP19883 344 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 MYCNOSP40205 109 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 EGFEM1PQ0D2K5 195 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 HNF4GQ14541 408 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 SLC22A6Q4U2R8 563 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 UTF1Q5T230 341 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 C6orf183Q5T699 404 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 OR2G6Q5TZ20 316 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 STEAP3Q658P3 488 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 DMKNQ6E0U4 476 aaPredicted RBP11.8□□□□□ -0.52
CLN3-222ENST00000566083 XAF1Q6GPH4 301 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 TEX38Q6PEX7 206 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 ZNF497Q6ZNH5 498 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 LINC00482Q8N8I6 264 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 GHSRQ92847 366 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 TMEM80Q96HE8 168 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 GFOD1Q9NXC2 390 aa11.8□□□□□ -0.52
CLN3-222ENST00000566083 FAM90A10PA6NDY2 464 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 FAM90A7PA6NKC0 464 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 NCBP2LA6PVI3 153 aaKnown RBP11.79□□□□□ -0.52
CLN3-222ENST00000566083 NUDT19A8MXV4 375 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 FAM90A23PA8MXZ1 464 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 C15orf65H3BRN8 121 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 MT-ND4P03905 459 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 GLAP06280 429 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 CD1BP29016 333 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 THBS3P49746 956 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 SMN1Q16637 294 aaKnown RBP11.79□□□□□ -0.52
CLN3-222ENST00000566083 C10orf99Q6UWK7 81 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 UNQ9370/PRO34162Q6UXP9 181 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 OR2W3Q7Z3T1 314 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 ZNF329Q86UD4 541 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 MRPL41Q8IXM3 137 aaKnown RBP11.79□□□□□ -0.52
CLN3-222ENST00000566083 STPG2Q8N412 459 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 PACRGLQ8N7B6 248 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 TRAPPC2LQ9UL33 140 aa11.79□□□□□ -0.52
CLN3-222ENST00000566083 DIAPH2-AS1Q14236 149 aa11.78□□□□□ -0.52
CLN3-222ENST00000566083 PNLIPRP3Q17RR3 467 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms