RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 RDH12Q96NR8 316 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 ZFP57Q9NU63 452 aa14.82□□□□□ -0.04
CLN3-218ENST00000565688 TRAV39A0A0B4J263 110 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 K7EIL1 84 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 CCRL2O00421 344 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 GEMIN2O14893 280 aaKnown RBP14.81□□□□□ -0.04
CLN3-218ENST00000565688 WBP4O75554 376 aaKnown RBP14.81□□□□□ -0.04
CLN3-218ENST00000565688 IGHG2P01859 326 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 EGFEM1PQ0D2K5 195 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 EBI3Q14213 229 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 SLC35E3Q7Z769 313 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 FOXRED2Q8IWF2 684 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 MRPL41Q8IXM3 137 aaKnown RBP14.81□□□□□ -0.04
CLN3-218ENST00000565688 SMIM19Q96E16 107 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 NOL4LQ96MY1 436 aaPredicted RBP14.81□□□□□ -0.04
CLN3-218ENST00000565688 MCRIP2Q9BUT9 160 aaKnown RBP14.81□□□□□ -0.04
CLN3-218ENST00000565688 BABAM2Q9NXR7 383 aa14.81□□□□□ -0.04
CLN3-218ENST00000565688 IGHV1-3A0A0C4DH29 117 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 OGG1O15527 345 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 ORC5O43913 435 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 GTF2F2P13984 249 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 MYL12AP19105 171 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 SERPINA2P20848 420 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 THBS3P49746 956 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 KRTAP10-11P60412 298 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 RIPK1Q13546 671 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 GPR176Q14439 515 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 SMN1Q16637 294 aaKnown RBP14.8□□□□□ -0.04
CLN3-218ENST00000565688 OR2G6Q5TZ20 316 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 OR2W3Q7Z3T1 314 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 MOB3BQ86TA1 216 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 LINC00311Q8N616 119 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 ARL11Q969Q4 196 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 SMPD3Q9NY59 655 aaPredicted RBP14.8□□□□□ -0.04
CLN3-218ENST00000565688 ZNF581Q9P0T4 197 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 CKLFQ9UBR5 152 aa14.8□□□□□ -0.04
CLN3-218ENST00000565688 EXOSC1Q9Y3B2 195 aaKnown RBP14.8□□□□□ -0.04
CLN3-218ENST00000565688 A0A1W2PPE3 182 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 NUDT19A8MXV4 375 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 C15orf65H3BRN8 121 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 SDCBPO00560 298 aaPredicted RBP14.79□□□□□ -0.04
CLN3-218ENST00000565688 IL3RAP26951 378 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 MED21Q13503 144 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 Q3ZCU0 254 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 ATAD3CQ5T2N8 411 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 ETV3LQ6ZN32 361 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 TGIF2LXQ8IUE1 241 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 IZUMO1Q8IYV9 350 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 STX19Q8N4C7 294 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 OR2T10Q8NGZ9 312 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 NEK7Q8TDX7 302 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 ZNF184Q99676 751 aaPredicted RBP14.79□□□□□ -0.04
CLN3-218ENST00000565688 GON7Q9BXV9 100 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 SPACA1Q9HBV2 294 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 RAB9BQ9NP90 201 aa14.79□□□□□ -0.04
CLN3-218ENST00000565688 DIMT1Q9UNQ2 313 aaKnown RBP14.79□□□□□ -0.04
CLN3-218ENST00000565688 SIRT4Q9Y6E7 314 aaPredicted RBP14.79□□□□□ -0.04
CLN3-218ENST00000565688 NCBP2LA6PVI3 153 aaKnown RBP14.78□□□□□ -0.04
CLN3-218ENST00000565688 AP4M1O00189 453 aa14.78□□□□□ -0.04
CLN3-218ENST00000565688 GPX5O75715 221 aa14.78□□□□□ -0.04
CLN3-218ENST00000565688 IGFBP3P17936 291 aaPredicted RBP14.78□□□□□ -0.04
CLN3-218ENST00000565688 MYCNOSP40205 109 aa14.78□□□□□ -0.04
CLN3-218ENST00000565688 SLC22A6Q4U2R8 563 aa14.78□□□□□ -0.04
CLN3-218ENST00000565688 DEFB121Q5J5C9 76 aa14.78□□□□□ -0.04
CLN3-218ENST00000565688 ZNF497Q6ZNH5 498 aa14.78□□□□□ -0.04
CLN3-218ENST00000565688 STPG2Q8N412 459 aa14.78□□□□□ -0.04
CLN3-218ENST00000565688 GHSRQ92847 366 aa14.78□□□□□ -0.04
CLN3-218ENST00000565688 EAF1Q96JC9 268 aaPredicted RBP14.78□□□□□ -0.04
CLN3-218ENST00000565688 LIN7CQ9NUP9 197 aaKnown RBP14.78□□□□□ -0.04
CLN3-218ENST00000565688 CHCHD3Q9NX63 227 aaKnown RBP14.78□□□□□ -0.04
CLN3-218ENST00000565688 GFOD1Q9NXC2 390 aa14.78□□□□□ -0.04
CLN3-218ENST00000565688 ZMAT5Q9UDW3 170 aaKnown RBP14.78□□□□□ -0.04
CLN3-218ENST00000565688 TRBV5-5A0A0J9YX44 114 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 WI2-2373I1.2A0A1W2PRP0 233 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 AIPO00170 330 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 MT-ND4P03905 459 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 HOXD3P31249 432 aaPredicted RBP14.77□□□□□ -0.05
CLN3-218ENST00000565688 REG1BP48304 166 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 TMEM30BQ3MIR4 351 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 Q499Y3 187 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 YIF1BQ5BJH7 314 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 VAX1Q5SQQ9 334 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 DMKNQ6E0U4 476 aaPredicted RBP14.77□□□□□ -0.05
CLN3-218ENST00000565688 TEX38Q6PEX7 206 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 C8orf86Q6ZUL3 223 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 Q8N6K4 173 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 KLHL30-AS1Q8NEE0 82 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 CCDC107Q8WV48 283 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 RTN4IP1Q8WWV3 396 aaPredicted RBP14.77□□□□□ -0.05
CLN3-218ENST00000565688 MRPS24Q96EL2 167 aaKnown RBP14.77□□□□□ -0.05
CLN3-218ENST00000565688 ABCG5Q9H222 651 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 LINC00527Q9UJ94 153 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 TENM3Q9P273 2699 aa14.77□□□□□ -0.05
CLN3-218ENST00000565688 NBEAL2Q6ZNJ1 2754 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 IGHV3-72A0A0B4J1Y9 119 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 MCRIP1C9JLW8 97 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 SPINT2O43291 252 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 TXNL1O43396 289 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 BAG2O95816 211 aa14.76□□□□□ -0.05
CLN3-218ENST00000565688 CD1BP29016 333 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms