RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 NPIPB11E5RHQ5 1161 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 AIPO00170 330 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 F2RL2O00254 374 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 ORC5O43913 435 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 BPNT1O95861 308 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 MPIG6BO95866 241 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 IGLV1-47P01700 117 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 CD37P11049 281 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 BRS3P32247 399 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 EMX1Q04741 257 aaPredicted RBP10.82□□□□□ -0.68
CLK3-213ENST00000563842 HLA-DRB5Q30154 266 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 CCDC144NLQ6NUI1 221 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 C11orf88Q6PI97 169 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 TRAT1Q6PIZ9 186 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 ZNF497Q6ZNH5 498 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 TMEM91Q6ZNR0 172 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 DYNAPQ8N1N2 210 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 TMEM104Q8NE00 496 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 OR4P4Q8NGL7 312 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 OR4C13Q8NGP0 309 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 FCGR1BQ92637 280 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 TAF15Q92804 592 aaKnown RBP eCLIP10.82□□□□□ -0.68
CLK3-213ENST00000563842 NEDD4LQ96PU5 975 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 TMEM59Q9BXS4 323 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 NPFFR1Q9GZQ6 430 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 PLGRKTQ9HBL7 147 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 ZNF286AQ9HBT8 521 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 TCF19Q9Y242 345 aa10.82□□□□□ -0.68
CLK3-213ENST00000563842 BUB1B-PAK6H3BSN5 160 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 SLC22A1O15245 554 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 PDCD6O75340 191 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 MT-ND4P03905 459 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 GALP22466 123 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 PAX6P26367 422 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 CALRP27797 417 aaKnown RBP10.81□□□□□ -0.68
CLK3-213ENST00000563842 GDNFP39905 211 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 MNDAP41218 407 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 KIR2DS4P43632 304 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 TMEM30BQ3MIR4 351 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 PLA1AQ53H76 456 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 C6orf183Q5T699 404 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 BRICD5Q6PL45 260 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 OR52M1Q8NGK5 317 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 RFESDQ8TAC1 157 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 PIFOQ8TCI5 191 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 ARL11Q969Q4 196 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 FAM46BQ96A09 425 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 MMP28Q9H239 520 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 ZNF581Q9P0T4 197 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 FBLN5Q9UBX5 448 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 TRAPPC2LQ9UL33 140 aa10.81□□□□□ -0.68
CLK3-213ENST00000563842 FAM172BPA6NC97 362 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 J3QR06 171 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 SLC17A2O00624 439 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 PDCD5O14737 125 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 SPINT2O43291 252 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 VSIG8P0DPA2 414 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 SSTR5P35346 364 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 FABP5Q01469 135 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 LDLRAD2Q5SZI1 272 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 SYT6Q5T7P8 510 aaPredicted RBP10.8□□□□□ -0.68
CLK3-213ENST00000563842 BAIAP2L2Q6UXY1 529 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 OR2W3Q7Z3T1 314 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 OR2T6Q8NHC8 308 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 WFDC12Q8WWY7 111 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 AKR1E2Q96JD6 320 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 URM1Q9BTM9 101 aaKnown RBP10.8□□□□□ -0.68
CLK3-213ENST00000563842 NDUFB11Q9NX14 153 aa10.8□□□□□ -0.68
CLK3-213ENST00000563842 A6NDX4 124 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 CCRL2O00421 344 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 ARSBP15848 533 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 MYL9P24844 172 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 RAB13P51153 203 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 PROK1P58294 105 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 RPS27AP62979 156 aaKnown RBP10.79□□□□□ -0.68
CLK3-213ENST00000563842 RAB11BQ15907 218 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 SSX1Q16384 188 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 LTC4SQ16873 150 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 Q3ZCU0 254 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 TPTE2P1Q5T6R2 138 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 UBE2UQ5VVX9 321 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 C16orf82Q7Z2V1 217 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 ZNF554Q86TJ5 538 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 SPARTQ8N0X7 666 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 GAPTQ8N292 157 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 CCDC107Q8WV48 283 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 CAPSLQ8WWF8 208 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 RPEQ96AT9 228 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 TM2D1Q9BX74 207 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 KCNIP1Q9NZI2 227 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 PSG11Q9UQ72 335 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 AK6Q9Y3D8 172 aaKnown RBP10.79□□□□□ -0.68
CLK3-213ENST00000563842 V9GY05 133 aa10.79□□□□□ -0.68
CLK3-213ENST00000563842 TRAV1-2A0A0B4J238 106 aa10.78□□□□□ -0.68
CLK3-213ENST00000563842 TRAV39A0A0B4J263 110 aa10.78□□□□□ -0.68
CLK3-213ENST00000563842 TRDV1A0A1B0GX56 115 aa10.78□□□□□ -0.68
CLK3-213ENST00000563842 UBE2QL1A1L167 161 aa10.78□□□□□ -0.68
CLK3-213ENST00000563842 TMEM14DPA8MWL7 114 aa10.78□□□□□ -0.68
CLK3-213ENST00000563842 C15orf65H3BRN8 121 aa10.78□□□□□ -0.68
CLK3-213ENST00000563842 SDCBPO00560 298 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms