RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TMPRSS13Q9BYE2 586 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 TINAGL1Q9GZM7 467 aaPredicted RBP9.39□□□□□ -0.91
USP3-218ENST00000560202 RIMS4Q9H426 269 aaPredicted RBP9.39□□□□□ -0.91
USP3-218ENST00000560202 SDHAF2Q9NX18 166 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 PPIAL4EA0A075B759 164 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 IGKV1D-8A0A087WSZ0 117 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 TMEM82A0PJX8 343 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 PPIAL4DF5H284 164 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 LGALS8O00214 317 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 B3GALNT1O75752 331 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 TCRBP04435 133 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 PPIAL4FP0DN26 164 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 TBPP20226 339 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 GIFP27352 417 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 HRH1P35367 487 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 RNASE10Q5GAN6 216 aaKnown RBP9.39□□□□□ -0.91
USP3-218ENST00000560202 STUMQ69YW2 141 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 Q6ZPA2 131 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 C17orf107Q6ZR85 190 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 BTN2A1Q7KYR7 527 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 GLCCI1Q86VQ1 547 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 PLPPR1Q8TBJ4 325 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 MRPL30Q8TCC3 161 aaKnown RBP9.39□□□□□ -0.91
USP3-218ENST00000560202 PLEKHF2Q9H8W4 249 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 DLL4Q9NR61 685 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 PPIAL4AQ9Y536 164 aa9.39□□□□□ -0.91
USP3-218ENST00000560202 PKDREJQ9NTG1 2253 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 CHD3Q12873 2000 aaKnown RBP9.38□□□□□ -0.91
USP3-218ENST00000560202 TRBV6-6A0A0A6YYG2 114 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 TRAV38-1A0A0B4J264 116 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 LYNX1G3V0Z9 82 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 H7C1Q1 480 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 ZNF737O75373 536 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 PEX14O75381 377 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 PMP2P02689 132 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 GYPAP02724 150 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 LYNX1P0DP58 116 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 COL8A2P25067 703 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 OR3A1P47881 315 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 KCNJ3P48549 501 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 HOXA1P49639 335 aaPredicted RBP9.38□□□□□ -0.91
USP3-218ENST00000560202 CCR6P51684 374 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 TAS2R46P59540 309 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 MEF2DQ14814 521 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 ATXN7L3Q14CW9 347 aaPredicted RBP9.38□□□□□ -0.91
USP3-218ENST00000560202 SRSF7Q16629 238 aaKnown RBP eCLIP9.38□□□□□ -0.91
USP3-218ENST00000560202 ACTBL2Q562R1 376 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 ZNF497Q6ZNH5 498 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 GAPTQ8N292 157 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 OR5AP2Q8NGF4 316 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 ASB13Q8WXK3 278 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 SDSLQ96GA7 329 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 SNX22Q96L94 193 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 REG4Q9BYZ8 158 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 ZNF286AQ9HBT8 521 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 Q9N2K0 584 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 ANXA10Q9UJ72 324 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 LRBAP50851 2863 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 ABCA4P78363 2273 aa9.38□□□□□ -0.91
USP3-218ENST00000560202 CACNA1DQ01668 2161 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 POM121CA8CG34 1229 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 MPTX1A8MV57 137 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 DISC1C4P0D8 188 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 MPC2O95563 127 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 AMY2AP04746 511 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 ZNF735P0CB33 412 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 CDKN1AP38936 164 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 MRPS11P82912 194 aaKnown RBP9.37□□□□□ -0.91
USP3-218ENST00000560202 BTN1A1Q13410 526 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 CHRFAM7AQ494W8 412 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 VAX1Q5SQQ9 334 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 ZNF880Q6PDB4 577 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 C20orf204Q6ZNR8 217 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 ZNF788Q6ZQV5 615 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 Q6ZS49 121 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 ZNF561Q8N587 486 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 SPICQ8N5J4 248 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 ZNRF1Q8ND25 227 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 OR11H4Q8NGC9 324 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 OR51S1Q8NGJ8 323 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 OR5H2Q8NGV7 314 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 PPP1R35Q8TAP8 253 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 CCL13Q99616 98 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 SLC6A7Q99884 636 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 ZNF665Q9H7R5 613 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 NUDT15Q9NV35 164 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 ARFGEF3Q5TH69 2177 aa9.37□□□□□ -0.91
USP3-218ENST00000560202 TMEM30CPA0ZSE6 113 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 K7N7A8 449 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 RP2O75695 350 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 LY6HO94772 140 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 IFNA6P05013 189 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 CSN2P05814 226 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 FGF2P09038 288 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 H2AFB2P0C5Z0 115 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 DAOP14920 347 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 RAP2BP61225 183 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 AESQ08117 197 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 OPCMLQ14982 345 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 ATPAF1Q5TC12 328 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms