RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PORCNQ9H237 461 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 OR51B6Q9H340 312 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 C1orf198Q9H425 327 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 SMDT1Q9H4I9 107 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM38AQ9H6F2 299 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 CWH43Q9H720 699 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 EXO5Q9H790 373 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 LPAR2Q9HBW0 351 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 NT5MQ9NPB1 228 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 LHX9Q9NQ69 397 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 CA10Q9NS85 328 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 ACER3Q9NUN7 267 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 TAS2R13Q9NYV9 303 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 GALPQ9UBC7 116 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 P2RX2Q9UBL9 471 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 CACFD1Q9UGQ2 172 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 TNFSF18Q9UNG2 199 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 FOXJ3Q9UPW0 622 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 ENPP4Q9Y6X5 453 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 V9GYS6 101 aa2.11□□□□□ -2.07
VPS13C-208ENST00000559119 SSC5DA1L4H1 1573 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SCN2AQ99250 2005 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ITGB4P16144 1822 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 NUP98P52948 1817 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 DENND4AQ7Z401 1863 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 A0A087WWC5 75 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 FXYD6-FXYD2A0A087WZ82 144 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TRBV6-7A0A0A0MS04 114 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TRAV14DV4A0A0A6YYC5 116 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 A0A1B0GTI1 187 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 A0A1B0GW64 132 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 A6NIZ1 184 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR5H1A6NKK0 313 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR52A4PA6NMU1 304 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR2AT4A6NND4 320 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SUPT3HB4E1H0 165 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 RNASEK-C17orf49H0YIS7 233 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 CLDN5O00501 218 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 PRRG1O14668 218 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TAAR5O14804 337 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 PPP1R2P9O14990 202 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 RNF13O43567 381 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 KDELR3O43731 214 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR1I1O60431 355 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ECI2O75521 394 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 GCM2O75603 506 aaPredicted RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 STK16O75716 305 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 DIRAS1O95057 198 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 JCHAINP01591 159 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 IGKV1D-16P01601 117 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 MT-ND4P03905 459 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 CD14P08571 375 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 CD3GP09693 182 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR5AC1P0C628 307 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 LIMS3P0CW19 117 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 LIMS4P0CW20 117 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TPT1P13693 172 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 FOLR1P15328 257 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF25P17030 456 aaPredicted RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 GSTM3P21266 225 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 NFYBP25208 207 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 HMGB2P26583 209 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 GABRR2P28476 465 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 MPIP34949 423 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 FAUP35544 74 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ARR3P36575 388 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 CD200P41217 278 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 RBM34P42696 430 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 H2BFSP57053 126 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 RGS8P57771 180 aaPredicted RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 OR10A3P58181 314 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TAS2R43P59537 309 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 RPS20P60866 119 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 RPS14P62263 151 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SPIBQ01892 262 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SSBP1Q04837 148 aaKnown RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SIGLEC14Q08ET2 396 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TWF1Q12792 350 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TSPAN31Q12999 210 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SKP2Q13309 424 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 RGNQ15493 299 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 UBE2V2Q15819 145 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 USF2Q15853 346 aaPredicted RBP2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ZSWIM7Q19AV6 140 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM241Q24JQ0 296 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 MAJINQ3KP22 176 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 GGTA1PQ4G0N0 100 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 C5orf47Q569G3 176 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 UBE2NLQ5JXB2 153 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 ADNP2Q6IQ32 1131 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SFXN4Q6P4A7 337 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SMARCD3Q6STE5 483 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SCIMPQ6UWF3 145 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 BTNL3Q6UXE8 466 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 TMIGD1Q6UXZ0 262 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 HEPN1Q6WQI6 88 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 LANCL3Q6ZV70 420 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 LRRC70Q7Z2Q7 622 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 SMIM15Q7Z3B0 74 aa2.1□□□□□ -2.07
VPS13C-208ENST00000559119 VTCN1Q7Z7D3 282 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms