RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 GAPDHP04406 335 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 SERPINA2P20848 420 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 SLC6A1P30531 599 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 ZNF93P35789 620 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 RBM11P57052 281 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 PPP3R1P63098 170 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 ZNF816Q0VGE8 651 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 NHLRC3Q5JS37 347 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 DDI2Q5TDH0 399 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 C8orf86Q6ZUL3 223 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 OR2W3Q7Z3T1 314 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 MOB3BQ86TA1 216 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 LINC00596Q86U02 117 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 COMMD1Q8N668 190 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 OR52N1Q8NH53 320 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 APH1BQ8WW43 257 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 ARL11Q969Q4 196 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 SLC29A1Q99808 456 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 MCRIP2Q9BUT9 160 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 IFT22Q9H7X7 185 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 FGF20Q9NP95 211 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 TMEM138Q9NPI0 162 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 PAK1IP1Q9NWT1 392 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 ZNF581Q9P0T4 197 aa8.75□□□□□ -1.01
CCDC88C-213ENST00000557455 IGHV3-72A0A0B4J1Y9 119 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 NCBP2LA6PVI3 153 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 SDCBPO00560 298 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 ZNF780AO75290 641 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 DCKP27707 260 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 BDKRB2P30411 391 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 MYCNOSP40205 109 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 REG1BP48304 166 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 ETV1P50549 477 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 EBI3Q14213 229 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 SMN1Q16637 294 aaKnown RBP8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 MPV17LQ2QL34 196 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 ATAD3CQ5T2N8 411 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 XAF1Q6GPH4 301 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 TMPRSS11AQ6ZMR5 421 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 C18orf65Q6ZTR6 163 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 TGIF2LXQ8IUE1 241 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 STPG2Q8N412 459 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 KLHL30-AS1Q8NEE0 82 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 ZNF555Q8NEP9 628 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 OR52M1Q8NGK5 317 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 OR2T10Q8NGZ9 312 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 NEK7Q8TDX7 302 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 CCDC107Q8WV48 283 aa8.74□□□□□ -1.01
CCDC88C-213ENST00000557455 IGHV3-43A0A0B4J1X8 118 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 LINC01548A6NM66 108 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 C15orf65H3BRN8 121 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 AP4M1O00189 453 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 ORC5O43913 435 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 IGHV3-43DP0DP04 118 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 GTF2F2P13984 249 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 IL3RAP26951 378 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 CD69Q07108 199 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 RIPK1Q13546 671 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 OR2G6Q5TZ20 316 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 C11orf87Q6NUJ2 197 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 TEX38Q6PEX7 206 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 UNQ9370/PRO34162Q6UXP9 181 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 ZNF695Q8IW36 515 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 IZUMO1Q8IYV9 350 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 PQLC1Q8N2U9 271 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 LINC00311Q8N616 119 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 UBALD1Q8TB05 177 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 ORAI1Q96D31 301 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 EAF1Q96JC9 268 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 ZNF184Q99676 751 aaPredicted RBP8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 GON7Q9BXV9 100 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 S100A14Q9HCY8 104 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 LIN7CQ9NUP9 197 aaKnown RBP8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 GFOD1Q9NXC2 390 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 BABAM2Q9NXR7 383 aa8.73□□□□□ -1.01
CCDC88C-213ENST00000557455 A0A1W2PP11 408 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 IRGMA1A4Y4 181 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 AIPO00170 330 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 OGG1O15527 345 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 WBP4O75554 376 aaKnown RBP8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 MT-ND4P03905 459 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 MYL12AP19105 171 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 GPR12P47775 334 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 GPR176Q14439 515 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 PNLIPRP3Q17RR3 467 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 SLC22A6Q4U2R8 563 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 ZNF497Q6ZNH5 498 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 STX19Q8N4C7 294 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 C8orf31Q8N9H6 132 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 OR13C5Q8NGS8 318 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 RTN4IP1Q8WWV3 396 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 SMIM19Q96E16 107 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 P2RX4Q99571 388 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 ABCG5Q9H222 651 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 SPACA1Q9HBV2 294 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 RAB9BQ9NP90 201 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 CKLFQ9UBR5 152 aa8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 ZMAT5Q9UDW3 170 aaKnown RBP8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 TRAPPC2LQ9UL33 140 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms