RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 MTCH2Q9Y6C9 303 aa2.03□□□□□ -2.08
SCFD1-221ENST00000556534 FBN1P35555 2871 aaKnown RBP2.03□□□□□ -2.08
SCFD1-221ENST00000556534 CLUHO75153 1309 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 MYO3BQ8WXR4 1341 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 A0A0A6YYH2 397 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 A6NJ64 397 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 F5H768 121 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 HPGDSO60760 199 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 CGB3P0DN86 165 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 CGB7P0DN87 165 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 COX5BP10606 129 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 GTF2F2P13984 249 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 AKR1C4P17516 323 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 ATF1P18846 271 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 ELK4P28324 431 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 PYCR1P32322 319 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 MPV17P39210 176 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 KRTAP12-4P60329 112 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 MYL6P60660 151 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 RPS11P62280 158 aaKnown RBP eCLIP2.02□□□□□ -2.09
SCFD1-221ENST00000556534 BAMBIQ13145 260 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 MED21Q13503 144 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 GOLGA7BQ2TAP0 167 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 ELP2Q6IA86 826 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 TMEM136Q6ZRR5 245 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 OLIG3Q7RTU3 272 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 DPPA2Q7Z7J5 298 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 DAZ4Q86SG3 579 aaKnown RBP2.02□□□□□ -2.09
SCFD1-221ENST00000556534 LRP11Q86VZ4 500 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 OR8A1Q8NGG7 326 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 OR4P4Q8NGL7 312 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 CLDN23Q96B33 292 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 RBP7Q96R05 134 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 PLA2G12AQ9BZM1 189 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 DAZ1Q9NQZ3 744 aaKnown RBP2.02□□□□□ -2.09
SCFD1-221ENST00000556534 ZNF586Q9NXT0 402 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 TP53TG1Q9Y2A0 90 aa2.02□□□□□ -2.09
SCFD1-221ENST00000556534 ARAP1Q96P48 1450 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 RIMS2Q9UQ26 1411 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 IGHV3-43A0A0B4J1X8 118 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 TINCRA0A1B0GVN0 87 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 GMNCA6NCL1 334 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 CCRL2O00421 344 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 MFNGO00587 321 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 BIRC5O15392 142 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 NRASP01111 189 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 HRASP01112 189 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 KRASP01116 189 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 HIST1H1CP16403 213 aaKnown RBP2.01□□□□□ -2.09
SCFD1-221ENST00000556534 TGFBR2P37173 567 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 ACTR1BP42025 376 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 CBX5P45973 191 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 IDH2P48735 452 aaKnown RBP2.01□□□□□ -2.09
SCFD1-221ENST00000556534 SKP2Q13309 424 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 HLA-DRB5Q30154 266 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 HES3Q5TGS1 186 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 ADM2Q7Z4H4 148 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 MTERF4Q7Z6M4 381 aaKnown RBP2.01□□□□□ -2.09
SCFD1-221ENST00000556534 ZFP82Q8N141 532 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 TMEM251Q8N6I4 163 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 OR11L1Q8NGX0 322 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 ZNRF2Q8NHG8 242 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 STOML3Q8TAV4 291 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 CASTOR1Q8WTX7 329 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 TVP23CQ96ET8 276 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 PARD6GQ9BYG4 376 aaPredicted RBP2.01□□□□□ -2.09
SCFD1-221ENST00000556534 NSRP1Q9H0G5 558 aaKnown RBP2.01□□□□□ -2.09
SCFD1-221ENST00000556534 VSIRQ9H7M9 311 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 SLC22A7Q9Y694 548 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 BAZ1AQ9NRL2 1556 aaPredicted RBP2.01□□□□□ -2.09
SCFD1-221ENST00000556534 BAZ1BQ9UIG0 1483 aaKnown RBP2.01□□□□□ -2.09
SCFD1-221ENST00000556534 ATAD5Q96QE3 1844 aa2.01□□□□□ -2.09
SCFD1-221ENST00000556534 IGHV1-45A0A0A0MS14 117 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 A0A1W2PNN7 141 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 IGLL5B9A064 214 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 RGS5O15539 181 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 KCNK2O95069 426 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 KLHL2O95198 593 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 FSTL3O95633 263 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 GABRA1P14867 456 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 LGALS3P17931 250 aaKnown RBP2□□□□□ -2.09
SCFD1-221ENST00000556534 F8A1P23610 371 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 ADORA1P30542 326 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 RCVRNP35243 200 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 ZNF83P51522 516 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 MP68P56378 58 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 RAB2AP61019 212 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 SLC36A2Q495M3 483 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 TTMPQ5BVD1 217 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 CCDC122Q5T0U0 273 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 MRPL2Q5T653 305 aaKnown RBP2□□□□□ -2.09
SCFD1-221ENST00000556534 PTRHD1Q6GMV3 140 aaKnown RBP2□□□□□ -2.09
SCFD1-221ENST00000556534 LAIR2Q6ISS4 152 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 DNM1P34Q6PK57 102 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 FAM19A5Q7Z5A7 132 aaPredicted RBP2□□□□□ -2.09
SCFD1-221ENST00000556534 VN1R4Q7Z5H5 301 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 TMEM144Q7Z5S9 345 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 SLC13A5Q86YT5 568 aaPredicted RBP2□□□□□ -2.09
SCFD1-221ENST00000556534 AMN1Q8IY45 258 aa2□□□□□ -2.09
SCFD1-221ENST00000556534 OR52E4Q8NGH9 312 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms