RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 MMP9P14780 707 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 BCL3P20749 454 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 CCL7P80098 99 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 TLE4Q04727 773 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 BAXQ07812 192 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 GAMTQ14353 236 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 C4orf17Q53FE4 359 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 DPPA3Q6W0C5 159 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 WDR5BQ86VZ2 330 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 GPR137CQ8N3F9 429 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 OR10G4Q8NGN3 311 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 EXTL1Q92935 676 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 C14orf144Q96I85 54 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 C19orf25Q9UFG5 118 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 RARRES3Q9UL19 164 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 FAM186AA6NE01 2351 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 MUC3AQ02505 3323 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 ELOA3CA0A087WX78 387 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 LOC102723971A0A1B0GUV8 181 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 ZNF716A6NP11 495 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 KIAA1324LA8MWY0 1029 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 BCAT2O15382 392 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 HLA-HP01893 362 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 UMODP07911 640 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 HIST1H1BP16401 226 aaKnown RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 UCP1P25874 307 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 DSCR4P56555 118 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 B3GALT5-AS1P59052 145 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 RPL23AP62750 156 aaKnown RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 HLA-DRB3P79483 266 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 DEFA6Q01524 100 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 TMEM267Q0VDI3 215 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 ZNF726P1Q15940 193 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 SRSF7Q16629 238 aaKnown RBP eCLIP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 MPV17LQ2QL34 196 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 DNLZQ5SXM8 178 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 AKR1C8PQ5T2L2 129 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 C20orf204Q6ZNR8 217 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 Q6ZRM9 215 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 Q6ZS49 121 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 MYPOPQ86VE0 399 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 CMTM1Q8IZ96 169 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 IL22RA1Q8N6P7 574 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 CPNE4Q96A23 557 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-212ENST00000552491 RSG1Q9BU20 258 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 OR2H1Q9GZK4 316 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 ZNF665Q9H7R5 613 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 Q9N2K0 584 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 SH2D2AQ9NP31 389 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 FSCN3Q9NQT6 498 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 RPRMQ9NS64 109 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 FAM86C1Q9NVL1 165 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 GNG13Q9P2W3 67 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 WDFY4Q6ZS81 3184 aa4.64□□□□□ -1.67
LIMA1-212ENST00000552491 DOCK11Q5JSL3 2073 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 TRAV1-1A0A0B4J248 108 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 PPP1R2P9O14990 202 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 TUSC2O75896 110 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 NAPSAO96009 420 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 IGHV3-9P01782 118 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 VDAC1P21796 283 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 FGF8P55075 233 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-212ENST00000552491 CLDN15P56746 228 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 TAS2R30P59541 319 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 CD81P60033 236 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 RAB11AP62491 216 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 RAC1P63000 192 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 ARL16Q0P5N6 197 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 RAB30Q15771 203 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 CEACAM16Q2WEN9 425 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 OR2T2Q6IF00 324 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 YRDCQ86U90 279 aaKnown RBP4.63□□□□□ -1.67
LIMA1-212ENST00000552491 THNSL2Q86YJ6 484 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 CPEB3Q8NE35 698 aaKnown RBP4.63□□□□□ -1.67
LIMA1-212ENST00000552491 IMMP1LQ96LU5 166 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 CCDC74BQ96LY2 380 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 SF3B5Q9BWJ5 86 aaKnown RBP4.63□□□□□ -1.67
LIMA1-212ENST00000552491 TMEM242Q9NWH2 141 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 GFOD1Q9NXC2 390 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 DKKL1Q9UK85 242 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 MED12LQ86YW9 2145 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 IGHV1-45A0A0A0MS14 117 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 ZNF816-ZNF321PA0A0X1KG74 233 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 A0A1B0GV90 55 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 ZFP92A6NM28 416 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 TGOLN2O43493 480 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 TK1P04183 234 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 CD55P08174 381 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 RFPL3SP0C7P2 107 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 RNF224P0DH78 156 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 PGA5P0DJD9 388 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 SRFP11831 508 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 CCL2P13500 99 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 FABP4P15090 132 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 CD200P41217 278 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 RPS18P62269 152 aaKnown RBP4.63□□□□□ -1.67
LIMA1-212ENST00000552491 NKX6-1P78426 367 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-212ENST00000552491 TLE1Q04724 770 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 FOXO1Q12778 655 aa4.63□□□□□ -1.67
LIMA1-212ENST00000552491 IL24Q13007 206 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms