RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ITFG2Q969R8 447 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 MOB3AQ96BX8 217 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 NRIP2Q9BQI9 281 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ST6GALNAC5Q9BVH7 336 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 OR52D1Q9H346 318 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF286AQ9HBT8 521 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 GAGE2DQ9UEU5 116 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 DNAH6Q9C0G6 4158 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 DNAH2Q9P225 4427 aa4.97□□□□□ -1.61
LIMA1-204ENST00000549064 IGHV4-28A0A0C4DH34 117 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 TRBV4-1A0A0J9YWV2 114 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 hADV38S2A0JD32 116 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 FAM90A10PA6NDY2 464 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 C12orf77C9JDV5 145 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 BUB1B-PAK6H3BSN5 160 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 I3L521 148 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 J3QT63 122 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 FGF16O43320 207 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 SERPINA1P01009 418 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 IGKV1D-33P01593 117 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 IGKV1-33P01594 117 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 CDK2P24941 298 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 SLC6A6P31641 620 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 MNDAP41218 407 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 HAAOP46952 286 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 MEF2CQ06413 473 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-204ENST00000549064 KIAA0141Q14154 515 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-204ENST00000549064 FHL2Q14192 279 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 DIAPH2-AS1Q14236 149 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 HLA-DRB5Q30154 266 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 FGD3Q5JSP0 725 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 PLCXD3Q63HM9 321 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 TRAPPC6BQ86SZ2 158 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 LYPD6Q86Y78 171 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 ZNF596Q8TC21 504 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 CCDC28BQ9BUN5 200 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 TMEM109Q9BVC6 243 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 PARD6BQ9BYG5 372 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 CHST6Q9GZX3 395 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 ALX4Q9H161 411 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-204ENST00000549064 HIPK2Q9H2X6 1198 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 RGCCQ9H4X1 137 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 HES4Q9HCC6 221 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 Q9N2K0 584 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 LINC00312Q9Y6C7 94 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 HERC1Q15751 4861 aa4.96□□□□□ -1.62
LIMA1-204ENST00000549064 DYNC1H1Q14204 4646 aaKnown RBP4.95□□□□□ -1.62
LIMA1-204ENST00000549064 A0A1W2PPI3 338 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 TMEM120BA0PK00 339 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 OR5B21A6NL26 309 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 F8VVB4 439 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 F8VWA3 439 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 FXYD1O00168 92 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 NOS1APO75052 506 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-204ENST00000549064 ZNF682O95780 498 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 IGHG4P01861 327 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 CLUP10909 449 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 PSMB8P28062 276 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 CEACAM3P40198 252 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 ESRRGP62508 458 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 PNRC1Q12796 327 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-204ENST00000549064 IFI44LQ53G44 452 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 ERICH5Q6P6B1 374 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 Q75L30 129 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 RTN4RL2Q86UN3 420 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 OR8B12Q8NGG6 310 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 OR5A2Q8NGI9 324 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 OR2T4Q8NH00 348 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 FAM81AQ8TBF8 368 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 MYOZ3Q8TDC0 251 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 RNF133Q8WVZ7 376 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 TOMM40LQ969M1 308 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 RPEQ96AT9 228 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 TMED9Q9BVK6 235 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 ANKRD19PQ9H560 264 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 VIPAS39Q9H9C1 493 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 RAB9BQ9NP90 201 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 IL36RNQ9UBH0 155 aa4.95□□□□□ -1.62
LIMA1-204ENST00000549064 NCBP2LA6PVI3 153 aaKnown RBP4.94□□□□□ -1.62
LIMA1-204ENST00000549064 OOSP1A8MZH6 123 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 FAM220BPB1ANY3 271 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 TOR1AO14656 332 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 FCGR3BO75015 233 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 DIRAS1O95057 198 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 IGHV3-7P01780 117 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 APOC1P02654 83 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 H1F0P07305 194 aaKnown RBP4.94□□□□□ -1.62
LIMA1-204ENST00000549064 CSN3P07498 182 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 FGF2P09038 288 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 H2BFMP0C1H6 154 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 CD34P28906 385 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 C21orf33P30042 268 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-204ENST00000549064 FMO3P31513 532 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 OPRL1P41146 370 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 KRTAP10-2P60368 255 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 ISL1P61371 349 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 ERVK11-1P61568 191 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 VSNL1P62760 191 aa4.94□□□□□ -1.62
LIMA1-204ENST00000549064 RBMS2Q15434 407 aaKnown RBP4.94□□□□□ -1.62
LIMA1-204ENST00000549064 GRK1Q15835 563 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms