RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 LMX1BO60663 402 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 GATBO75879 557 aaKnown RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 RGS11O94810 467 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 LALBAP00709 142 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 IGHV2-70P01814 119 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 SLC25A16P16260 332 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 CELP19835 753 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 NKX2-1P43699 371 aaPredicted RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 GPR6P46095 362 aaPredicted RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 GPM6AP51674 278 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 KRTAP1-1Q07627 177 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 YIF1BQ5BJH7 314 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 C6orf183Q5T699 404 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 DMKNQ6E0U4 476 aaPredicted RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 Q6ZSR3 168 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF367Q7RTV3 350 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 MUC20Q8N307 709 aaPredicted RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OR1M1Q8NGA1 313 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OR5A2Q8NGI9 324 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OR51A4Q8NGJ6 313 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OR5D14Q8NGL3 314 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OR5M8Q8NGP6 311 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 OR10AC1Q8NH08 325 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 LRRC20Q8TCA0 184 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 Q8TCH9 128 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 GPR148Q8TDV2 347 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 SCARB1Q8WTV0 552 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 PP6455Q8WZ26 134 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 UFD1Q92890 307 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 TNFRSF14Q92956 283 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 HINT2Q9BX68 163 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 CHST5Q9GZS9 411 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 GAL3ST2Q9H3Q3 398 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 TMEM106BQ9NUM4 274 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 UFSP2Q9NUQ7 469 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 C1orf123Q9NWV4 160 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 LSM2Q9Y333 95 aaKnown RBP4.26□□□□□ -1.73
CLIP1-217ENST00000543205 CACNG2Q9Y698 323 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 DNHD1Q96M86 4753 aa4.26□□□□□ -1.73
CLIP1-217ENST00000543205 AKAP9Q99996 3911 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 ARFGEF3Q5TH69 2177 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 IGHV4-30-2A0A087WSY4 118 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 LRP5LA4QPB2 252 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 RNF222A6NCQ9 220 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 OR5B21A6NL26 309 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF732B4DXR9 585 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 TNFAIP8O95379 198 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 CD2P06729 351 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 CRYGBP07316 175 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 GIFP27352 417 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 NR4A2P43354 598 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 SOX2P48431 317 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 GNG3P63215 75 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 EMX1Q04741 257 aaPredicted RBP4.25□□□□□ -1.73
CLIP1-217ENST00000543205 GPR50Q13585 617 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 MPPED2Q15777 294 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 UBE2V2Q15819 145 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 DMRTC1Q5HYR2 192 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 AVPI1Q5T686 147 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 TMEM42Q69YG0 159 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 KCNIP4Q6PIL6 250 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF773Q6PK81 442 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 SPNS3Q6ZMD2 512 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF841Q6ZN19 808 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 DNM1P46Q6ZS02 220 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 UTS2BQ765I0 119 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 TGIF2LYQ8IUE0 185 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 OR52I2Q8NH67 350 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF420Q8TAQ5 688 aaPredicted RBP4.25□□□□□ -1.73
CLIP1-217ENST00000543205 RPS4Y2Q8TD47 263 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 NPRL2Q8WTW4 380 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 HPSE2Q8WWQ2 592 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 ADAT3Q96EY9 351 aaPredicted RBP4.25□□□□□ -1.73
CLIP1-217ENST00000543205 MGLLQ99685 303 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 REG4Q9BYZ8 158 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 BPESC1Q9GZL8 116 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 HIPK2Q9H2X6 1198 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 ISYNA1Q9NPH2 558 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 ACOT13Q9NPJ3 140 aa4.25□□□□□ -1.73
CLIP1-217ENST00000543205 GAR1Q9NY12 217 aaKnown RBP4.25□□□□□ -1.73
CLIP1-217ENST00000543205 PQLC2LA1A4F0 135 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 ISPDA4D126 451 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 TMEM178BH3BS89 294 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 CDIPTO14735 213 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 NBR2O15453 112 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RP2O75695 350 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 DFFBO76075 338 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 CYB5R3P00387 301 aaPredicted RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 ATF1P18846 271 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RAB3AP20336 220 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 USF1P22415 310 aaPredicted RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 PMELP40967 661 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RAB9AP51151 201 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 FUT6P51993 359 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 ATP1B3P54709 279 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 MLLT11Q13015 90 aaPredicted RBP4.24□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF154Q13106 437 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 ZNF181Q2M3W8 571 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 Q499Y3 187 aa4.24□□□□□ -1.73
CLIP1-217ENST00000543205 RNASE12Q5GAN4 147 aaKnown RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms