RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 ST8SIA2Q92186 375 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 RIMS4Q9H426 269 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-216ENST00000541410 IFT22Q9H7X7 185 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 HES4Q9HCC6 221 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 F5H0A9 414 aaPredicted RBP12.23□□□□□ -0.45
CLIP1-216ENST00000541410 HSPA12AO43301 675 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 IFNA21P01568 189 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 KCNJ3P48549 501 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 TMPRSS3P57727 454 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 IL15RAQ13261 267 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 CLLU1Q5K131 121 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 FAM201AQ5SY85 155 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 TMEM268Q5VZI3 342 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 CLEC9AQ6UXN8 241 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 LIAT1Q6ZQX7 453 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 SLC51BQ86UW2 128 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 SLC35G3Q8N808 338 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 OR52M1Q8NGK5 317 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 TMEM171Q8WVE6 324 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 GALNT14Q96FL9 552 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 OR2V2Q96R30 315 aa12.23□□□□□ -0.45
CLIP1-216ENST00000541410 TPRP12270 2363 aaKnown RBP12.23□□□□□ -0.45
CLIP1-216ENST00000541410 BCL2L11O43521 198 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 TUSC2O75896 110 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 KLF3P57682 345 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-216ENST00000541410 NKX6-1P78426 367 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-216ENST00000541410 ZNF345Q14585 488 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 ZNF880Q6PDB4 577 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 COMMD7Q86VX2 200 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 FAM169BQ8N8A8 192 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 CCDC71LQ8N9Z2 235 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 MRPL37Q9BZE1 423 aaKnown RBP12.22□□□□□ -0.45
CLIP1-216ENST00000541410 TAF9BQ9HBM6 251 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 TAAR3PQ9P1P4 343 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 KIF25Q9UIL4 384 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 UBE2J1Q9Y385 318 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-216ENST00000541410 TRBV6-7A0A0A0MS04 114 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 NXPH3O95157 252 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 COL10A1Q03692 680 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 SRSF7Q16629 238 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLIP1-216ENST00000541410 PRSS54Q6PEW0 395 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 OR4A4PQ8NGN8 299 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 OR51H1Q8NH63 302 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 FBXO9Q9UK97 447 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-216ENST00000541410 USF3Q68DE3 2245 aa12.22□□□□□ -0.45
CLIP1-216ENST00000541410 GPR31O00270 319 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 NMBP08949 121 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 ZNF250P15622 560 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 CD40P25942 277 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 GLRXP35754 106 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 GABRA2P47869 451 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 FIP1L1Q6UN15 594 aaKnown RBP12.21□□□□□ -0.45
CLIP1-216ENST00000541410 MOGAT3Q86VF5 341 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 H1FOOQ8IZA3 346 aaPredicted RBP12.21□□□□□ -0.45
CLIP1-216ENST00000541410 SCARB1Q8WTV0 552 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 C18orf12Q96KH6 178 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 DCTN5Q9BTE1 182 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 SUCNR1Q9BXA5 334 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 RHOFQ9HBH0 211 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 PCDHB10Q9UN67 800 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 OR2W1Q9Y3N9 320 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 SPEF1Q9Y4P9 236 aa12.21□□□□□ -0.45
CLIP1-216ENST00000541410 RBM7Q9Y580 266 aaKnown RBP12.21□□□□□ -0.45
CLIP1-216ENST00000541410 TRBV6-6A0A0A6YYG2 114 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 LINC00862A6NCI5 91 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 C16orf97H3BN30 126 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 B3GALNT1O75752 331 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 HOXD4P09016 255 aaPredicted RBP12.21□□□□□ -0.46
CLIP1-216ENST00000541410 OR3A1P47881 315 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 EDDM3AQ14507 147 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 MRGPRGQ86SM5 289 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 CD177Q8N6Q3 437 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 OR1L1Q8NH94 360 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 ITLN1Q8WWA0 313 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 TLNRD1Q9H1K6 362 aa12.21□□□□□ -0.46
CLIP1-216ENST00000541410 IGHV3-13P01766 116 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 MBPP02686 304 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-216ENST00000541410 CTXN2P0C2S0 81 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 MDH2P40926 338 aaKnown RBP12.2□□□□□ -0.46
CLIP1-216ENST00000541410 GLIPR1P48060 266 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 LGI3Q8N145 548 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 ZCCHC24Q8N2G6 241 aaKnown RBP12.2□□□□□ -0.46
CLIP1-216ENST00000541410 MRGPRDQ8TDS7 321 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 COQ2Q96H96 371 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 CNTNAP3BQ96NU0 1288 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 ARPC5LQ9BPX5 153 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 CNTNAP3Q9BZ76 1288 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 OR2S2Q9NQN1 319 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 ZC4H2Q9NQZ6 224 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 PPP1R3CQ9UQK1 317 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 MEMO1Q9Y316 297 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 TRGV8A0A0C4DH27 118 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 NKX2-6A6NCS4 301 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-216ENST00000541410 ABCD4O14678 606 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 SNAPC5O75971 98 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 GLAP06280 429 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 OR8U9P0C7N5 309 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 TUBG1P23258 451 aa12.2□□□□□ -0.46
CLIP1-216ENST00000541410 CEACAM6P40199 344 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms