RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 MUC1P15941 1255 aaPredicted RBP12.3□□□□□ -0.44
COLCA1-204ENST00000540738 BSPH1Q075Z2 132 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 PTX4Q96A99 478 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 ZNF331Q9NQX6 463 aaPredicted RBP12.3□□□□□ -0.44
COLCA1-204ENST00000540738 C9orf106Q8NAJ2 232 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 GSTZ1O43708 216 aaPredicted RBP12.3□□□□□ -0.44
COLCA1-204ENST00000540738 PPYP01298 95 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 SLC38A11Q08AI6 406 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 SAXO1Q8IYX7 474 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 RPS4Y2Q8TD47 263 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 TUBD1Q9UJT1 453 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 SLC45A2Q9UMX9 530 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 HILPDAQ9Y5L2 63 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 LHFPL6Q9Y693 200 aa12.3□□□□□ -0.44
COLCA1-204ENST00000540738 IL18BPO95998 194 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 SNRNP40Q96DI7 357 aaKnown RBP12.29□□□□□ -0.44
COLCA1-204ENST00000540738 GHITMQ9H3K2 345 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 ICE1Q9Y2F5 2266 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 IGKV1D-42A0A075B6H8 117 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 DUS4LO95620 317 aaKnown RBP12.29□□□□□ -0.44
COLCA1-204ENST00000540738 FSTP19883 344 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 PAX6P26367 422 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 SLC25A53Q5H9E4 307 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 HIST2H3PS2Q5TEC6 136 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 ZNF787Q6DD87 383 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 ZNF488Q96MN9 340 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 WDFY2Q96P53 400 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 SAMD10Q9BYL1 202 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 CYB5R3P00387 301 aaPredicted RBP12.29□□□□□ -0.44
COLCA1-204ENST00000540738 OPN1MWP04001 364 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 CECR9P0C854 216 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 OPN1MW2P0DN77 364 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 OPN1MW3P0DN78 364 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 CSRP3P50461 194 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 LSM11P83369 360 aaKnown RBP eCLIP12.29□□□□□ -0.44
COLCA1-204ENST00000540738 INSL4Q14641 139 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 NCR3LG1Q68D85 454 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 FLVCR1-AS1Q8TAF5 88 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 A0A0G2JMM0 328 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 A0A1W2PPB8 328 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 A0A1W2PRS3 328 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 KIR3DP1A8MWS1 328 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 VSIG8P0DPA2 414 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 ZNF561Q8N587 486 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 Q9N2K0 584 aa12.29□□□□□ -0.44
COLCA1-204ENST00000540738 PYCARD-AS1I3L0S3 204 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 SS18L1O75177 396 aaPredicted RBP12.28□□□□□ -0.44
COLCA1-204ENST00000540738 OR10Z1Q8NGY1 313 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 BCL2L2Q92843 193 aaPredicted RBP12.28□□□□□ -0.44
COLCA1-204ENST00000540738 FAM131CQ96AQ9 280 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 CTF1Q16619 201 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 TBC1D26Q86UD7 250 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 SCARB1Q8WTV0 552 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 PFDN5Q99471 154 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 TGFBR3LH3BV60 316 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 HOXA4Q00056 320 aaPredicted RBP12.28□□□□□ -0.44
COLCA1-204ENST00000540738 CACNA1BQ00975 2339 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 PPP1R1CQ8WVI7 109 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 ATP5SQ99766 215 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 YAE1D1Q9NRH1 226 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 POM121CA8CG34 1229 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 UMAD1C9J7I0 102 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 CST7O76096 145 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 SLC25A4P12235 298 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 LYZP61626 148 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 ARF6P62330 175 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 LIAT1Q6ZQX7 453 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 CCDC190Q86UF4 302 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 POM121Q96HA1 1249 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 PARD6AQ9NPB6 346 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 TMEM106BQ9NUM4 274 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 GNG13Q9P2W3 67 aa12.28□□□□□ -0.44
COLCA1-204ENST00000540738 NPIPB9F8W1W9 429 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 OR2H2O95918 312 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 S100A8P05109 93 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 OR5AC1P0C628 307 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 CLDN18P56856 261 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 ZNF826PQ6ZT77 177 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 GLRX5Q86SX6 157 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 FAM219AQ8IW50 185 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 NINQ8N4C6 2090 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 KIR3DL2P43630 455 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 LHX2P50458 406 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 WDR31Q8NA23 367 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 SAT2Q96F10 170 aaPredicted RBP12.27□□□□□ -0.44
COLCA1-204ENST00000540738 IDI2-AS1Q9NZ38 188 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 OR1A1Q9P1Q5 309 aa12.27□□□□□ -0.44
COLCA1-204ENST00000540738 A0A0A6YYJ9 748 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 ODAMA1E959 279 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 NEURL1O76050 574 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 ISG15P05161 165 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 TIMP3P35625 211 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 DSCR9P59020 149 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 OR10A7Q8NGE5 316 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 OR9G1Q8NH87 305 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 PARP11Q9NR21 331 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 CBLN4Q9NTU7 201 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 KLHDC2Q9Y2U9 406 aa12.27□□□□□ -0.45
COLCA1-204ENST00000540738 PPP1CCP36873 323 aaKnown RBP12.27□□□□□ -0.45
COLCA1-204ENST00000540738 WASHC3Q9Y3C0 194 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms