RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 KIR2DS1A0A191URI9 304 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 OR6C6A6NF89 314 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 FOSL1P15407 271 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 UCP1P25874 307 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 KIR2DS4P43632 304 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 KIR2DS1Q14954 304 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 Q6ZSR3 168 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 SMRP1Q8NCR6 262 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 GPR146Q96CH1 333 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 GPR87Q9BY21 358 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 OR2H1Q9GZK4 316 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 Q9N2K0 584 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 SEMA5BQ9P283 1151 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 A0A1B0GU03 582 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 GDF9O60383 454 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 IFNA1P01562 189 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 OPN1MWP04001 364 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 OPN1MW2P0DN77 364 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 OPN1MW3P0DN78 364 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 CCL2P13500 99 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 NDUFB7P17568 137 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 RAC1P63000 192 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 ODF3L1Q8IXM7 274 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 OR10A7Q8NGE5 316 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 GTF3AQ92664 365 aaKnown RBP9.66□□□□□ -0.86
SYNE1-237ENST00000539504 HS3ST6Q96QI5 342 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 WNT5BQ9H1J7 359 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 PSENENQ9NZ42 101 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 CACNG5Q9UF02 275 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 PITPNC1Q9UKF7 332 aa9.66□□□□□ -0.86
SYNE1-237ENST00000539504 PRUNE2Q8WUY3 3088 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 TRAPPC2LH3BP13 241 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 PGLYRP1O75594 196 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-237ENST00000539504 PSG2P11465 335 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 SSR4P51571 173 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 ERVS71-1P61550 626 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 CCL7P80098 99 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 RAB30Q15771 203 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 SPANXN5Q5MJ07 72 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 CADM4Q8NFZ8 388 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 ABHD14BQ96IU4 210 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 OR5B12Q96R08 314 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 IL36GQ9NZH8 169 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 ERRFI1Q9UJM3 462 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-237ENST00000539504 KCNS2Q9ULS6 477 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 A0A0G2JRQ6 117 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 TGOLN2O43493 480 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 PAX9P55771 341 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 PCBD1P61457 104 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 Q3ZCU0 254 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 NCR3LG1Q68D85 454 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 TMEM42Q69YG0 159 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 DPPA3Q6W0C5 159 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 BEND4Q6ZU67 534 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 MKXQ8IYA7 352 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 UBALD1Q8TB05 177 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 LHX4Q969G2 390 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 SGCZQ96LD1 299 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 LURAP1Q96LR2 239 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 HIST1H2AAQ96QV6 131 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 SLC39A9Q9NUM3 307 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 CISD1Q9NZ45 108 aaKnown RBP9.65□□□□□ -0.86
SYNE1-237ENST00000539504 TAAR3PQ9P1P4 343 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 ZNF407Q9C0G0 2248 aa9.65□□□□□ -0.86
SYNE1-237ENST00000539504 MAP1LC3B2A6NCE7 125 aa9.65□□□□□ -0.87
SYNE1-237ENST00000539504 GJE1A6NN92 205 aa9.65□□□□□ -0.87
SYNE1-237ENST00000539504 F2RP25116 425 aa9.65□□□□□ -0.87
SYNE1-237ENST00000539504 NTF4P34130 210 aa9.65□□□□□ -0.87
SYNE1-237ENST00000539504 FOXO1Q12778 655 aa9.65□□□□□ -0.87
SYNE1-237ENST00000539504 MAP1LC3BQ9GZQ8 125 aa9.65□□□□□ -0.87
SYNE1-237ENST00000539504 SDF2L1Q9HCN8 221 aa9.65□□□□□ -0.87
SYNE1-237ENST00000539504 FGF7P21781 194 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 CLDN15P56746 228 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 PRDX4Q13162 271 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 HERPUD1Q15011 391 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 OR8G2PQ6IF36 304 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 ZNF66Q6ZN08 573 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 MRPL21Q7Z2W9 205 aaKnown RBP9.64□□□□□ -0.87
SYNE1-237ENST00000539504 OR1K1Q8NGR3 316 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 OR4X1Q8NH49 305 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 OR2V1Q8NHB1 315 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 CPT1CQ8TCG5 803 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 PSMF1Q92530 271 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 POM121Q96HA1 1249 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 RCC1LQ96I51 464 aaKnown RBP9.64□□□□□ -0.87
SYNE1-237ENST00000539504 CCDC74BQ96LY2 380 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 RAB40CQ96S21 281 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 PPP1R3CQ9UQK1 317 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 A0A096LPE4 126 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 DUXBA0A1W2PPF3 345 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 A0A1W2PPZ6 126 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 XKRY2A2RUG3 117 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 H0Y980 276 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 CYTIPO60759 359 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 CEACAM1P13688 526 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 RAC3P60763 192 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 OR8G1Q15617 311 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 TCEAL6Q6IPX3 200 aa9.64□□□□□ -0.87
SYNE1-237ENST00000539504 RPS19BP1Q86WX3 136 aaKnown RBP9.64□□□□□ -0.87
SYNE1-237ENST00000539504 OR5D13Q8NGL4 314 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms