RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 HSD17B6O14756 317 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 FGF16O43320 207 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 REG1BP48304 166 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 PAX5Q02548 391 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 RIPK1Q13546 671 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 DIAPH2-AS1Q14236 149 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 SLC22A6Q4U2R8 563 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 COMMD1Q8N668 190 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 Q8NFD4 153 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 CCDC107Q8WV48 283 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 RGP1Q92546 391 aaPredicted RBP11.68□□□□□ -0.54
VPS28-215ENST00000531924 NOL4LQ96MY1 436 aaPredicted RBP11.68□□□□□ -0.54
VPS28-215ENST00000531924 MCRIP2Q9BUT9 160 aaKnown RBP11.68□□□□□ -0.54
VPS28-215ENST00000531924 IFT22Q9H7X7 185 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 RAB9BQ9NP90 201 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 BABAM2Q9NXR7 383 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 IL36GQ9NZH8 169 aa11.68□□□□□ -0.54
VPS28-215ENST00000531924 GEMIN2O14893 280 aaKnown RBP11.67□□□□□ -0.54
VPS28-215ENST00000531924 GTF2F2P13984 249 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 SLC6A1P30531 599 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 HOXD3P31249 432 aaPredicted RBP11.67□□□□□ -0.54
VPS28-215ENST00000531924 ETV1P50549 477 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 RPL23AP62750 156 aaKnown RBP11.67□□□□□ -0.54
VPS28-215ENST00000531924 GPR176Q14439 515 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 SMN1Q16637 294 aaKnown RBP11.67□□□□□ -0.54
VPS28-215ENST00000531924 MPV17LQ2QL34 196 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 NHLRC3Q5JS37 347 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 OR2G6Q5TZ20 316 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 UNQ9370/PRO34162Q6UXP9 181 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 OR2W3Q7Z3T1 314 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 MRPL41Q8IXM3 137 aaKnown RBP11.67□□□□□ -0.54
VPS28-215ENST00000531924 LINC00482Q8N8I6 264 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 KLHL30-AS1Q8NEE0 82 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 APH1BQ8WW43 257 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 GON7Q9BXV9 100 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 SPACA1Q9HBV2 294 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 SMPD3Q9NY59 655 aaPredicted RBP11.67□□□□□ -0.54
VPS28-215ENST00000531924 ZMAT5Q9UDW3 170 aaKnown RBP11.67□□□□□ -0.54
VPS28-215ENST00000531924 LINC00527Q9UJ94 153 aa11.67□□□□□ -0.54
VPS28-215ENST00000531924 IGHV3-72A0A0B4J1Y9 119 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 IGHV1-3A0A0C4DH29 117 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 MCRIP1C9JLW8 97 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 K7EIL1 84 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 AIPO00170 330 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 RAB25P57735 213 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 ZNF816Q0VGE8 651 aaPredicted RBP11.66□□□□□ -0.54
VPS28-215ENST00000531924 XAF1Q6GPH4 301 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 C8orf86Q6ZUL3 223 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 OR52M1Q8NGK5 317 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 OR2T10Q8NGZ9 312 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 UBALD1Q8TB05 177 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 GHSRQ92847 366 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 SMIM19Q96E16 107 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 EAF1Q96JC9 268 aaPredicted RBP11.66□□□□□ -0.54
VPS28-215ENST00000531924 RDH12Q96NR8 316 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 ZNF184Q99676 751 aaPredicted RBP11.66□□□□□ -0.54
VPS28-215ENST00000531924 TRAPPC2LQ9UL33 140 aa11.66□□□□□ -0.54
VPS28-215ENST00000531924 EXOSC1Q9Y3B2 195 aaKnown RBP11.66□□□□□ -0.54
VPS28-215ENST00000531924 AP4M1O00189 453 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 SPINT2O43291 252 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 ORC5O43913 435 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 WBP4O75554 376 aaKnown RBP11.65□□□□□ -0.54
VPS28-215ENST00000531924 IGHG2P01859 326 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 MYCNOSP40205 109 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 THBS3P49746 956 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 VAX1Q5SQQ9 334 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 TEX38Q6PEX7 206 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 TGIF2LXQ8IUE1 241 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 ZNF695Q8IW36 515 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 STPG2Q8N412 459 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 JAGN1Q8N5M9 183 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 CYGBQ8WWM9 190 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 RASL11BQ9BPW5 248 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 GFOD1Q9NXC2 390 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 ZNF581Q9P0T4 197 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 GNG12Q9UBI6 72 aa11.65□□□□□ -0.54
VPS28-215ENST00000531924 DIMT1Q9UNQ2 313 aaKnown RBP11.65□□□□□ -0.54
VPS28-215ENST00000531924 IGHV3-43A0A0B4J1X8 118 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 WI2-2373I1.2A0A1W2PRP0 233 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 OGG1O15527 345 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 MT-ND4P03905 459 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 IGHV3-43DP0DP04 118 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 KRTAP10-11P60412 298 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 CD69Q07108 199 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 DCTN2Q13561 401 aaKnown RBP11.64□□□□□ -0.55
VPS28-215ENST00000531924 Q499Y3 187 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 YIF1BQ5BJH7 314 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 C6orf183Q5T699 404 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 PRR18Q8N4B5 295 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 C8orf31Q8N9H6 132 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 SETD9Q8NE22 299 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 OR13C5Q8NGS8 318 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 ORAI1Q96D31 301 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 TMEM80Q96HE8 168 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 ETAA1Q9NY74 926 aa11.64□□□□□ -0.55
VPS28-215ENST00000531924 MRPS28Q9Y2Q9 187 aaKnown RBP11.64□□□□□ -0.55
VPS28-215ENST00000531924 DNAH3Q8TD57 4116 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 C15orf65H3BRN8 121 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 EBAG9O00559 213 aa11.63□□□□□ -0.55
VPS28-215ENST00000531924 TXNL1O43396 289 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms