RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 GPR137CQ8N3F9 429 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 BEND2Q8NDZ0 799 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 RNASEH2CQ8TDP1 164 aaKnown RBP12.21□□□□□ -0.45
USP48-213ENST00000529637 METTL9Q9H1A3 318 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 TRBV24-1A0A075B6N3 115 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 A0A0U1RQV5 110 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 H3BP45 60 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 ZNHIT1O43257 154 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 P04436 131 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 CARD18P57730 90 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 IL11RAQ14626 422 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 RSPO1Q2MKA7 263 aaPredicted RBP12.21□□□□□ -0.46
USP48-213ENST00000529637 PIGYQ3MUY2 71 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 TEX38Q6PEX7 206 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 OR8G5Q8NG78 346 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 NABP1Q96AH0 204 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 PLEKHF2Q9H8W4 249 aa12.21□□□□□ -0.46
USP48-213ENST00000529637 LYRM2Q9NU23 88 aaPredicted RBP12.21□□□□□ -0.46
USP48-213ENST00000529637 A0A0G2JMM0 328 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 A0A1W2PPB8 328 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 A0A1W2PRS3 328 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 KIR3DP1A8MWS1 328 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 HSPA12AO43301 675 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 DKK1O94907 266 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 CCNOP22674 350 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 AADACP22760 399 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 RAB4BP61018 213 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 ERVS71-1P61550 626 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 ARL6IP1Q15041 203 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 C9orf135Q5VTT2 229 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 OR10A7Q8NGE5 316 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 SYT3Q9BQG1 590 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 ANGPTL4Q9BY76 406 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 DNAJC13O75165 2243 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 LOC102725191A0A1B0GVB3 256 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 ZNF732B4DXR9 585 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 FGF5P12034 268 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 C10orf128Q5T292 105 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 AAED1Q7RTV5 226 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 THNSL2Q86YJ6 484 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 SNIP1Q8TAD8 396 aaKnown RBP12.2□□□□□ -0.46
USP48-213ENST00000529637 CLDN23Q96B33 292 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 IMMP1LQ96LU5 166 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 WDR54Q9H977 334 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 SDF2L1Q9HCN8 221 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 ADAMTS20P59510 1910 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 C3orf85A0A1B0GTC6 90 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 ADAM20O43506 726 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 CBR3O75828 277 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 ZNF32P17041 273 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 RAC1P63000 192 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 RELQ04864 619 aaPredicted RBP12.2□□□□□ -0.46
USP48-213ENST00000529637 TMEM54Q969K7 222 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 LRFN1Q9P244 771 aa12.2□□□□□ -0.46
USP48-213ENST00000529637 IGKV1-27A0A075B6S5 117 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 A6NNC1 897 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 B4DEV8 164 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 KLF7O75840 302 aaPredicted RBP12.19□□□□□ -0.46
USP48-213ENST00000529637 ZNF100Q8IYN0 542 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 ZIC4Q8N9L1 334 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 PIGCQ92535 297 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 RBMXL1Q96E39 390 aaKnown RBP12.19□□□□□ -0.46
USP48-213ENST00000529637 RSG1Q9BU20 258 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 COL6A3P12111 3177 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 HOXA6P31267 233 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 GNB2P62879 340 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 TLE4Q04727 773 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 WIPI1Q5MNZ9 446 aaPredicted RBP12.19□□□□□ -0.46
USP48-213ENST00000529637 FAM180AQ6UWF9 173 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 OR2Y1Q8NGV0 311 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 TMEM37Q8WXS4 190 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 ELOVL1Q9BW60 279 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 PROK2Q9HC23 129 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 RPRMQ9NS64 109 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 PILRBQ9UKJ0 227 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 LAMP3Q9UQV4 416 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 V9GYS6 101 aa12.19□□□□□ -0.46
USP48-213ENST00000529637 PRRC2CQ9Y520 2896 aaKnown RBP12.19□□□□□ -0.46
USP48-213ENST00000529637 TRDCB7Z8K6 153 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 CHST1O43916 411 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 CA11O75493 328 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 CTSSP25774 331 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 PAX5Q02548 391 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 ZNF726P1Q15940 193 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 PMS2CLQ68D20 193 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 ZNF66Q6ZN08 573 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 OR1F12Q8NHA8 337 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 TMEM242Q9NWH2 141 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 DMDP11532 3685 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 GJE1A6NN92 205 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 MPPED1O15442 326 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 GALR2O43603 387 aaPredicted RBP12.18□□□□□ -0.46
USP48-213ENST00000529637 ZNF133P52736 654 aaPredicted RBP12.18□□□□□ -0.46
USP48-213ENST00000529637 VAMP2P63027 116 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 SRYQ05066 204 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 PMS2P11Q13670 270 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 CEACAM16Q2WEN9 425 aa12.18□□□□□ -0.46
USP48-213ENST00000529637 PDGFBP01127 241 aaPredicted RBP12.18□□□□□ -0.46
USP48-213ENST00000529637 MRPS34P82930 218 aaKnown RBP12.18□□□□□ -0.46
USP48-213ENST00000529637 RTP5Q14D33 572 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms