RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 FAM216AQ8WUB2 273 aa10.85□□□□□ -0.67
VPS28-210ENST00000529182 ZFAND2BQ8WV99 257 aa10.85□□□□□ -0.67
VPS28-210ENST00000529182 SULT4A1Q9BR01 284 aa10.85□□□□□ -0.67
VPS28-210ENST00000529182 CENPOQ9BU64 300 aa10.85□□□□□ -0.67
VPS28-210ENST00000529182 CLEC7AQ9BXN2 247 aa10.85□□□□□ -0.67
VPS28-210ENST00000529182 CHIAQ9BZP6 476 aa10.85□□□□□ -0.67
VPS28-210ENST00000529182 ZNF286AQ9HBT8 521 aa10.85□□□□□ -0.67
VPS28-210ENST00000529182 VCX3AQ9NNX9 186 aa10.85□□□□□ -0.67
VPS28-210ENST00000529182 ANK2Q01484 3957 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 TENM1Q9UKZ4 2725 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 CLDN34H7C241 214 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 LDLRAD4O15165 306 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 SOCS1O15524 211 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 IGHV3-7P01780 117 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 RNASE1P07998 156 aaKnown RBP10.84□□□□□ -0.67
VPS28-210ENST00000529182 CLEC2LP0C7M8 214 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 IER3P46695 156 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 ACTG1P63261 375 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 MXD1Q05195 221 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 BEND2Q8NDZ0 799 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 SSMEM1Q8WWF3 244 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 LEAP2Q969E1 77 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 YIPF6Q96EC8 236 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 KIRREL1Q96J84 757 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 KCTD7Q96MP8 289 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 NEDD4LQ96PU5 975 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 FAAP24Q9BTP7 215 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 IDI2-AS1Q9NZ38 188 aa10.84□□□□□ -0.67
VPS28-210ENST00000529182 NPIPB11E5RHQ5 1161 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 C15orf65H3BRN8 121 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 GLAP06280 429 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 JUNBP17275 347 aaPredicted RBP10.83□□□□□ -0.68
VPS28-210ENST00000529182 RCC1P18754 421 aaPredicted RBP10.83□□□□□ -0.68
VPS28-210ENST00000529182 BLVRBP30043 206 aaPredicted RBP10.83□□□□□ -0.68
VPS28-210ENST00000529182 SDC2P34741 201 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 TGFBR1P36897 503 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 VEGFCP49767 419 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 EFNB2P52799 333 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 OR52W1Q6IF63 320 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 FAM53AQ6NSI3 398 aaPredicted RBP10.83□□□□□ -0.68
VPS28-210ENST00000529182 C16orf87Q6PH81 154 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 C5orf24Q7Z6I8 188 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 GAPTQ8N292 157 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 OR4P4Q8NGL7 312 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 MRPL30Q8TCC3 161 aaKnown RBP10.83□□□□□ -0.68
VPS28-210ENST00000529182 ARL11Q969Q4 196 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 URM1Q9BTM9 101 aaKnown RBP10.83□□□□□ -0.68
VPS28-210ENST00000529182 LINC00574Q9H8X3 128 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 ZMAT3Q9HA38 289 aaKnown RBP10.83□□□□□ -0.68
VPS28-210ENST00000529182 LIN7BQ9HAP6 207 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 TRAPPC2LQ9UL33 140 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 POMT1Q9Y6A1 747 aa10.83□□□□□ -0.68
VPS28-210ENST00000529182 IGHV3-43A0A0B4J1X8 118 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 FOXI3A8MTJ6 420 aaPredicted RBP10.82□□□□□ -0.68
VPS28-210ENST00000529182 NOTOA8MTQ0 251 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 C12orf77C9JDV5 145 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 IGHV3-43DP0DP04 118 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 CFPP27918 469 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 TMEM50BP56557 158 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 LSM3P62310 102 aaKnown RBP10.82□□□□□ -0.68
VPS28-210ENST00000529182 SSX2Q16385 188 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 TPRA1Q86W33 373 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 FAM89BQ8N5H3 189 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 TMEM86BQ8N661 226 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 NDNFQ8TB73 568 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 SSX3Q99909 188 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 MEGF9Q9H1U4 602 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 DPAGT1Q9H3H5 408 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 PLEKHJ1Q9NW61 149 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 FBLN5Q9UBX5 448 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 DAPK2Q9UIK4 370 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 TBL2Q9Y4P3 447 aaKnown RBP10.82□□□□□ -0.68
VPS28-210ENST00000529182 HILPDAQ9Y5L2 63 aa10.82□□□□□ -0.68
VPS28-210ENST00000529182 A0A087X0M5 115 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 A0A1B0GX30 115 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 FAM181BA6NEQ2 426 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 H3BUI4 141 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 H3BUX3 64 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 AIREO43918 545 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 IGLV1-47P01700 117 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 GZMHP20718 246 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 CD34P28906 385 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 GNG10P50151 68 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 RAB13P51153 203 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 FAM189A2Q15884 450 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 LY6EQ16553 131 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 LRRC75BQ2VPJ9 315 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 MOGAT2Q3SYC2 334 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 SFXN4Q6P4A7 337 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 Q6ZPA2 131 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 PRR18Q8N4B5 295 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 OR1L1Q8NH94 360 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 GCDHQ92947 438 aaPredicted RBP10.81□□□□□ -0.68
VPS28-210ENST00000529182 MALSU1Q96EH3 234 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 ARHGAP5-AS1Q96IT6 56 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 HDHD3Q9BSH5 251 aaPredicted RBP10.81□□□□□ -0.68
VPS28-210ENST00000529182 PECRQ9BY49 303 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 RAB22AQ9UL26 194 aa10.81□□□□□ -0.68
VPS28-210ENST00000529182 A0A1W2PPE3 182 aa10.8□□□□□ -0.68
VPS28-210ENST00000529182 BTBD17A6NE02 478 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms