RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 UBE2KP61086 200 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 CD164Q04900 197 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 TSPAN31Q12999 210 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 TMEM176BQ3YBM2 270 aaPredicted RBP1.27□□□□□ -2.21
VPS50-219ENST00000495039 FAM162BQ5T6X4 162 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 TCF23Q7RTU1 214 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 DNAAF3Q8N9W5 541 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 ACBD4Q8NC06 268 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 OR10P1Q8NGE3 313 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 DTD1Q8TEA8 209 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 CATSPER2Q96P56 530 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 GOLPH3Q9H4A6 298 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 ZNF286AQ9HBT8 521 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 IFT46Q9NQC8 304 aa1.27□□□□□ -2.21
VPS50-219ENST00000495039 NXT1Q9UKK6 140 aaKnown RBP1.27□□□□□ -2.21
VPS50-219ENST00000495039 ADAMTS7Q9UKP4 1686 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 VWDEQ8N2E2 1590 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 CACNA1GO43497 2377 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 IGHV3OR15-7A0A075B7D8 119 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 A8MWP6 167 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 PSMD11O00231 422 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 PLPP3O14495 311 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 CDIPTO14735 213 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 CRXO43186 299 aaPredicted RBP1.26□□□□□ -2.21
VPS50-219ENST00000495039 AKR1C4P17516 323 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 MAGEA3P43357 314 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 MP68P56378 58 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 RAB2AP61019 212 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 FOXF1Q12946 379 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 FAM19A3Q7Z5A8 133 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 GTF2H4Q92759 462 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 MSANTD3Q96H12 275 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 PGLYRP3Q96LB9 341 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 FAAP24Q9BTP7 215 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 POTEKPQ9BYX7 375 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 AICDAQ9GZX7 198 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 FBXL15Q9H469 300 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 TAS2R13Q9NYV9 303 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 STRCP1A6NGW2 1772 aa1.26□□□□□ -2.21
VPS50-219ENST00000495039 PLXNA3P51805 1871 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 MYO5BQ9ULV0 1848 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 TOR1AO14656 332 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 FABP7O15540 132 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 GABRA3P34903 492 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 UGT2B10P36537 528 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 AQP5P55064 265 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 OR8G1Q15617 311 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 BSXQ3C1V8 233 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 ZNF767PQ75MW2 155 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 LRRC6Q86X45 466 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 TRIML2Q8N7C3 387 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 CDRT4Q8N9R6 151 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 OR4C16Q8NGL9 310 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 OR2Y1Q8NGV0 311 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 FAM45AQ8TCE6 357 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 TMEM239Q8WW34 195 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 OR5P2Q8WZ92 322 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 DDIT4LQ96D03 193 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 TXNDC17Q9BRA2 123 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 HAUS4Q9H6D7 363 aa1.25□□□□□ -2.21
VPS50-219ENST00000495039 COL18A1P39060 1754 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 ABCB11O95342 1321 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 LOC102725191A0A1B0GVB3 256 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 IGSF23A1L1A6 192 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 K7EQS6 105 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 DENRO43583 198 aaKnown RBP1.24□□□□□ -2.21
VPS50-219ENST00000495039 LDOC1O95751 146 aaPredicted RBP1.24□□□□□ -2.21
VPS50-219ENST00000495039 CST4P01036 141 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 LTAP01374 205 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 CPMP14384 443 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 BLVRBP30043 206 aaPredicted RBP1.24□□□□□ -2.21
VPS50-219ENST00000495039 PAFAH1B3Q15102 231 aaKnown RBP1.24□□□□□ -2.21
VPS50-219ENST00000495039 AHSA2Q719I0 299 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 MRPL52Q86TS9 123 aaKnown RBP1.24□□□□□ -2.21
VPS50-219ENST00000495039 RNASE11Q8TAA1 199 aaKnown RBP1.24□□□□□ -2.21
VPS50-219ENST00000495039 CD200R1Q8TD46 325 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 MRAP2Q96G30 205 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 CAPZA3Q96KX2 299 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 PRSS27Q9BQR3 290 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 CCL26Q9Y258 94 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 WASHC3Q9Y3C0 194 aa1.24□□□□□ -2.21
VPS50-219ENST00000495039 DNMT1P26358 1616 aaKnown RBP1.24□□□□□ -2.21
VPS50-219ENST00000495039 PTPRKQ15262 1439 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 IGKV1-12A0A0C4DH73 117 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 ERICH4A6NGS2 130 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 B4DEV8 164 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 C8orf87E5RJ46 101 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 LY6LH3BQJ8 138 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 BOLA2-SMG1P6H3BVE0 249 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 SNAP29O95721 258 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 IGKV1D-12P01611 117 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 S100A9P06702 114 aaKnown RBP1.23□□□□□ -2.21
VPS50-219ENST00000495039 CRYGDP07320 174 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 OR4A8P0C604 315 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 CCL2P13500 99 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 ATF1P18846 271 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 PSMA1P25786 263 aaKnown RBP1.23□□□□□ -2.21
VPS50-219ENST00000495039 ZNF140P52738 457 aaPredicted RBP1.23□□□□□ -2.21
VPS50-219ENST00000495039 PCOTHQ58A44 107 aa1.23□□□□□ -2.21
VPS50-219ENST00000495039 Q6ZRU5 148 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms