RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 VN1R4Q7Z5H5 301 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 GATD1Q8NB37 220 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 OR13C9Q8NGT0 318 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 CD200R1Q8TD46 325 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 ZMYND19Q96E35 227 aaPredicted RBP0.76□□□□□ -2.29
VPS50-217ENST00000485140 MBOAT7Q96N66 472 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 ZNF251Q9BRH9 671 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 CHID1Q9BWS9 393 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 MAP1LC3CQ9BXW4 147 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 FBXO44Q9H4M3 255 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 RPRD1BQ9NQG5 326 aaKnown RBP0.76□□□□□ -2.29
VPS50-217ENST00000485140 PSMD13Q9UNM6 376 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 WASHC3Q9Y3C0 194 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 HEY1Q9Y5J3 304 aa0.76□□□□□ -2.29
VPS50-217ENST00000485140 YLPM1P49750 1951 aaKnown RBP0.76□□□□□ -2.29
VPS50-217ENST00000485140 SLIT2O94813 1529 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 USP42Q9H9J4 1324 aaKnown RBP0.75□□□□□ -2.29
VPS50-217ENST00000485140 TRAV8-2A0A0B4J237 113 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 GSTTP1A0A1W2PQM5 241 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 GOLGA8IPA6NC78 632 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 FAM183AA6NL82 134 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 RNASEK-C17orf49H0YIS7 233 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 TMEM250H0YL14 139 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 KDELR3O43731 214 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 ZNF189O75820 626 aaPredicted RBP0.75□□□□□ -2.29
VPS50-217ENST00000485140 FBP1P09467 338 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 ZNF3P17036 446 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 BGNP21810 368 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 LPAR6P43657 344 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 INPP1P49441 399 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 BAXQ07812 192 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 HTR4Q13639 388 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 FAHD1Q6P587 224 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 ASCL4Q6XD76 172 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 DGAT2L6Q6ZPD8 337 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 PID1Q7Z2X4 250 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 C10orf126Q8N4M7 172 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 SPICQ8N5J4 248 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 ZIC4Q8N9L1 334 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 ACBD4Q8NC06 268 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 TMBIM1Q969X1 311 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 ZNF707Q96C28 371 aaPredicted RBP0.75□□□□□ -2.29
VPS50-217ENST00000485140 MRPS24Q96EL2 167 aaKnown RBP0.75□□□□□ -2.29
VPS50-217ENST00000485140 ZNF396Q96N95 335 aaPredicted RBP0.75□□□□□ -2.29
VPS50-217ENST00000485140 ALX4Q9H161 411 aaPredicted RBP0.75□□□□□ -2.29
VPS50-217ENST00000485140 DDX18Q9NVP1 670 aaKnown RBP0.75□□□□□ -2.29
VPS50-217ENST00000485140 NDUFB11Q9NX14 153 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 FIS1Q9Y3D6 152 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 COL4A2P08572 1712 aa0.75□□□□□ -2.29
VPS50-217ENST00000485140 ADGRB3O60242 1522 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 ARAP3Q8WWN8 1544 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 ZNF638Q14966 1978 aaKnown RBP0.74□□□□□ -2.29
VPS50-217ENST00000485140 K7EQS6 105 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 PSMD11O00231 422 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 CRYGDP07320 174 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 SFTPCP11686 197 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 SPNP16150 400 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 CD36P16671 472 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 AKR1C4P17516 323 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 GABRA3P34903 492 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 OR2B6P58173 313 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 RAB2AP61019 212 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 TSPAN5P62079 268 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 PRDX1Q06830 199 aaKnown RBP0.74□□□□□ -2.29
VPS50-217ENST00000485140 SS18Q15532 418 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 TRIP13Q15645 432 aaPredicted RBP0.74□□□□□ -2.29
VPS50-217ENST00000485140 VAMP3Q15836 100 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 CAVIN4Q5BKX8 364 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 ACTL10Q5JWF8 245 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 SDIM1Q6ZPB5 146 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 SSX6Q7RTT6 188 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 ZBTB8OSQ8IWT0 167 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 SYS1Q8N2H4 156 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 OR4A15Q8NGL6 344 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 ZNF563Q8TA94 476 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 TOP1MTQ969P6 601 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 ZNF625Q96I27 306 aaPredicted RBP0.74□□□□□ -2.29
VPS50-217ENST00000485140 NAP1L5Q96NT1 182 aaPredicted RBP0.74□□□□□ -2.29
VPS50-217ENST00000485140 OR52B2Q96RD2 323 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 EBNA1BP2Q99848 306 aaKnown RBP0.74□□□□□ -2.29
VPS50-217ENST00000485140 TAPBPLQ9BX59 468 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 EBPLQ9BY08 206 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 POTEKPQ9BYX7 375 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 SMDT1Q9H4I9 107 aa0.74□□□□□ -2.29
VPS50-217ENST00000485140 METTL8Q9H825 291 aaKnown RBP0.74□□□□□ -2.29
VPS50-217ENST00000485140 TRPM3Q9HCF6 1732 aaPredicted RBP0.73□□□□□ -2.29
VPS50-217ENST00000485140 PTPRJQ12913 1337 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 COL4A1P02462 1669 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 IGLV3-9A0A075B6K5 115 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 MUC21A0A0G2JKD1 596 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 MUC21A0A140T8X8 626 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 MGAT4DA6NG13 374 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 FGF16O43320 207 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 VAPBO95292 243 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 LTAP01374 205 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 HINT1P49773 126 aaPredicted RBP0.73□□□□□ -2.29
VPS50-217ENST00000485140 MP68P56378 58 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 VSNL1P62760 191 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 MAPK14Q16539 360 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 NKAIN1Q4KMZ8 207 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms