RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 CRB1P82279 1406 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 IGKV1D-43A0A0B4J1Z2 117 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 LOC102725191A0A1B0GVB3 256 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 A0A1B0GW15 77 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 A0A1B0GX12 115 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 C19orf71A6NCJ1 209 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 PSMD11O00231 422 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 FGF16O43320 207 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 CST4P01036 141 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 GP1BAP07359 652 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 GIMD1P0DJR0 217 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 OR12D1P0DN82 309 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 MLNP12872 115 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 CCNOP22674 350 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 PSMB9P28065 219 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 NUP62P37198 522 aaPredicted RBP0.66□□□□□ -2.3
VPS50-216ENST00000484954 MAGEA6P43360 314 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 KCNJ3P48549 501 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 DSTNP60981 165 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 UBE2KP61086 200 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 HES1Q14469 280 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 PYCR3Q53H96 274 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 FAM162BQ5T6X4 162 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 LAMTOR1Q6IAA8 161 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 FAM183BPQ6ZVS7 135 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 AHSA2Q719I0 299 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 SSX7Q7RTT5 188 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 C10orf107Q8IVU9 208 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 ZFAND2AQ8N6M9 145 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 OR10P1Q8NGE3 313 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 MFSD8Q8NHS3 518 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 FAM45AQ8TCE6 357 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 GPR119Q8TDV5 335 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 LMX1AQ8TE12 382 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 NELFBQ8WX92 580 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 PITX2Q99697 317 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 C1QTNF6Q9BXI9 259 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 EBPLQ9BY08 206 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 OR51E2Q9H255 320 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 HAUS4Q9H6D7 363 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 TAS2R13Q9NYV9 303 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 NAGKQ9UJ70 344 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 VPREB3Q9UKI3 123 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 POMPQ9Y244 141 aa0.66□□□□□ -2.3
VPS50-216ENST00000484954 FAM183AA6NL82 134 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 ODF3BA8MYP8 253 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 F8VP50 259 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 RNASEK-C17orf49H0YIS7 233 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 ANGP03950 147 aaKnown RBP0.65□□□□□ -2.31
VPS50-216ENST00000484954 PSKH1P11801 424 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 SPNP16150 400 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 ZNF3P17036 446 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 PYCR1P32322 319 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 MP68P56378 58 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 TSPAN5P62079 268 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 VSNL1P62760 191 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 PDGFRLQ15198 375 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 TRIP13Q15645 432 aaPredicted RBP0.65□□□□□ -2.31
VPS50-216ENST00000484954 BSXQ3C1V8 233 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 FAM229BQ4G0N7 80 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 OR10J3Q5JRS4 329 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 AADACL4Q5VUY2 407 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 NIPAL1Q6NVV3 410 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 EBLN2Q6P2I7 272 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 SSX6Q7RTT6 188 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 DEFB119Q8N690 84 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 YIPF7Q8N8F6 280 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 FER1L6-AS1Q8NA97 138 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 ACBD4Q8NC06 268 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 OR11L1Q8NGX0 322 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 OR2V1Q8NHB1 315 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 TMEM239Q8WW34 195 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 RORBQ92753 470 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 CLDN23Q96B33 292 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 MSANTD3Q96H12 275 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 PGLYRP3Q96LB9 341 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 FAAP24Q9BTP7 215 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 AICDAQ9GZX7 198 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 GOLPH3Q9H4A6 298 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 C16orf95Q9H693 158 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 TMBIM4Q9HC24 238 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 DIABLOQ9NR28 239 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 AGPAT3Q9NRZ7 376 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 ADAMTS7Q9UKP4 1686 aa0.65□□□□□ -2.31
VPS50-216ENST00000484954 TRAV8-2A0A0B4J237 113 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 IGSF23A1L1A6 192 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 RAB19A4D1S5 217 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 LY6LH3BQJ8 138 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 I3L4J1 428 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 UBDO15205 165 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 FABP7O15540 132 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 SLC25A20O43772 301 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 SPOPO43791 374 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 ZNF189O75820 626 aaPredicted RBP0.64□□□□□ -2.31
VPS50-216ENST00000484954 GUSBP08236 651 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 SLC35E2BP0CK96 405 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 BLVRBP30043 206 aaPredicted RBP0.64□□□□□ -2.31
VPS50-216ENST00000484954 RPA3P35244 121 aaPredicted RBP0.64□□□□□ -2.31
VPS50-216ENST00000484954 INPP1P49441 399 aa0.64□□□□□ -2.31
VPS50-216ENST00000484954 RAB2AP61019 212 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms