RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ARGFXA6NJG6 315 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 IQCF5A8MTL0 148 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 HSBP1L1C9JCN9 74 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 GPR171O14626 319 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 LECT2O14960 151 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 OPN1SWP03999 348 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 GYPCP04921 128 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 GUSBP08236 651 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 LIMS3P0CW19 117 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 LIMS4P0CW20 117 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 AKR1C4P17516 323 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 SYT1P21579 422 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 INPP1P49441 399 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 MP68P56378 58 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 C1QTNF8P60827 252 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 RAB2AP61019 212 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 DYNLL1P63167 89 aaKnown RBP1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 ANGPT1Q15389 498 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 SYCP1Q15431 976 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 TMEM249Q2WGJ8 235 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 C10orf91Q5T1B1 145 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 SSX7Q7RTT5 188 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 SYCE1Q8N0S2 351 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 MUC15Q8N387 334 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 PHOSPHO2Q8TCD6 241 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 DTD1Q8TEA8 209 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 ACBD6Q9BR61 282 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 HIGD2AQ9BW72 106 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 OR52A5Q9H2C5 316 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 METTL17Q9H7H0 456 aaPredicted RBP1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 KCNIP2Q9NS61 270 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 SLC23A2Q9UGH3 650 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 LINC00588Q9Y4M8 146 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 PHLDA3Q9Y5J5 127 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 URGCP-MRPS24S4R325 110 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 NLRC5Q86WI3 1866 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 CACNA1DQ01668 2161 aa1.28□□□□□ -2.2
CCDC88A-212ENST00000474059 LTBP2Q14767 1821 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 MYO5BQ9ULV0 1848 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 PTPRKQ15262 1439 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 BRD4O60885 1362 aaPredicted RBP1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 EFCAB9A8MZ26 197 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 ZNF878C9JN71 531 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 M0QX08 132 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 NEMFO60524 1076 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 SH2D1AO60880 128 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 CDS2O95674 445 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 NPPAP01160 153 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 PSKH1P11801 424 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 ZNF22P17026 224 aaPredicted RBP1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 GZMMP51124 257 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 SKP2Q13309 424 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 APOFQ13790 326 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 PYCR3Q53H96 274 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 HES3Q5TGS1 186 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 TMPPEQ6ZT21 453 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 TCF23Q7RTU1 214 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 SPPL2BQ8TCT7 592 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 RNASEH2CQ8TDP1 164 aaKnown RBP1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 LMX1AQ8TE12 382 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 ZCCHC13Q8WW36 166 aaKnown RBP1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 RAD51AP1Q96B01 352 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 FAM210AQ96ND0 272 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 POTEKPQ9BYX7 375 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 ARL6Q9H0F7 186 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 MS4A12Q9NXJ0 267 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 COMMD9Q9P000 198 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 RPUSD1Q9UJJ7 312 aaKnown RBP1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 FBXL3Q9UKT7 428 aa1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 YLPM1P49750 1951 aaKnown RBP1.27□□□□□ -2.21
CCDC88A-212ENST00000474059 SHANK3Q9BYB0 1731 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 IGHV3OR15-7A0A075B7D8 119 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 IGKV1-12A0A0C4DH73 117 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 ERICH2A1L162 156 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 SDHAF1A6NFY7 115 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 C3orf84H3BNL1 204 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 MKRN2OSH3BPM6 223 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 SMLR1H3BR10 107 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 EEF1E1O43324 174 aaKnown RBP1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 MPZL2O60487 215 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 UGT2B11O75310 529 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 NDUFS6O75380 124 aaKnown RBP1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 LTAP01374 205 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 IGKV1D-12P01611 117 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 CTSGP08311 255 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 ATF1P18846 271 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 RCVRNP35243 200 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 COILP38432 576 aaPredicted RBP1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 ACTR1BP42025 376 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 SLAMF1Q13291 335 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 PAFAH1B3Q15102 231 aaKnown RBP1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 RBM48Q5RL73 367 aaKnown RBP1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 SCXQ7RTU7 201 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 NIT1Q86X76 327 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 MSRB3Q8IXL7 192 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 OR5D18Q8NGL1 313 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 OR9I1Q8NGQ6 314 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 OR11L1Q8NGX0 322 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 ZNRF2Q8NHG8 242 aa1.26□□□□□ -2.21
CCDC88A-212ENST00000474059 DYNC2LI1Q8TCX1 351 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms