RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 GAL3ST2Q9H3Q3 398 aa11.32□□□□□ -0.6
CXCR4-203ENST00000466288 ZMAT4Q9H898 229 aa11.32□□□□□ -0.6
CXCR4-203ENST00000466288 EDA2RQ9HAV5 297 aa11.32□□□□□ -0.6
CXCR4-203ENST00000466288 ERVK13-1Q9NX77 482 aa11.32□□□□□ -0.6
CXCR4-203ENST00000466288 CLEC2DQ9UHP7 191 aa11.32□□□□□ -0.6
CXCR4-203ENST00000466288 GSTK1Q9Y2Q3 226 aa11.32□□□□□ -0.6
CXCR4-203ENST00000466288 A0A075B6Q4 140 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 A0A087X0M5 115 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 A0A1B0GX30 115 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 FAM230AA0A1W2PPH8 454 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 TOR1AO14656 332 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 ZNF254O75437 659 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 SRSF10O75494 262 aaKnown RBP11.31□□□□□ -0.6
CXCR4-203ENST00000466288 FRMD6-AS1P0C7T7 363 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 LIMS3P0CW19 117 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 LIMS4P0CW20 117 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 SLC2A5P22732 501 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 DUSP1P28562 367 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 FGF9P31371 208 aaPredicted RBP11.31□□□□□ -0.6
CXCR4-203ENST00000466288 FHL3Q13643 280 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 GALEQ14376 348 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 FOXRED2Q8IWF2 684 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 ZNF679Q8IYX0 411 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 RNF152Q8N8N0 203 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 BBS1Q8NFJ9 593 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 OR6Q1Q8NGQ2 317 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 EMG1Q92979 244 aaKnown RBP11.31□□□□□ -0.6
CXCR4-203ENST00000466288 TAS2R3Q9NYW6 316 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 SLC7A11Q9UPY5 501 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 PEX16Q9Y5Y5 336 aa11.31□□□□□ -0.6
CXCR4-203ENST00000466288 SIRT4Q9Y6E7 314 aaPredicted RBP11.31□□□□□ -0.6
CXCR4-203ENST00000466288 TRGV10A0A0A0MS01 117 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 PNMA8CA0A1B0GUJ8 204 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 METTL15A6NJ78 407 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 ZNF670-ZNF695F2Z2N8 137 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 IL1AP01583 271 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 TMEM11P17152 192 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 PRRX1P54821 245 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 RBM39Q14498 530 aaKnown RBP11.3□□□□□ -0.6
CXCR4-203ENST00000466288 PNLIPRP3Q17RR3 467 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 CD200R1LQ6Q8B3 271 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 DRAM1Q8N682 238 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 MCFD2Q8NI22 146 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 MNTQ99583 582 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 CHCHD6Q9BRQ6 235 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 OR51E2Q9H255 320 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 PCLOQ9Y6V0 5065 aa11.3□□□□□ -0.6
CXCR4-203ENST00000466288 TRDV1A0A1B0GX56 115 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 CCDC182A6NF36 153 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 DHRS7CA6NNS2 312 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 OR2T7P0C7T2 308 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 CD40LGP29965 261 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 S100A5P33763 92 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 INSL3P51460 131 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 RIDAP52758 137 aaKnown RBP11.29□□□□□ -0.6
CXCR4-203ENST00000466288 LSM3P62310 102 aaKnown RBP11.29□□□□□ -0.6
CXCR4-203ENST00000466288 ZNF45Q02386 682 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 HNF4GQ14541 408 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 ZNF146Q15072 292 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 UBE2V2Q15819 145 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 ZNF322Q6U7Q0 402 aaPredicted RBP11.29□□□□□ -0.6
CXCR4-203ENST00000466288 SLC25A26Q70HW3 274 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 RPEQ96AT9 228 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 AKIP1Q9NQ31 210 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 PCDHB16Q9NRJ7 776 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 RBFOX1Q9NWB1 397 aaKnown RBP11.29□□□□□ -0.6
CXCR4-203ENST00000466288 BABAM2Q9NXR7 383 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 COPS3Q9UNS2 423 aa11.29□□□□□ -0.6
CXCR4-203ENST00000466288 LOC100506127A0A0U1RQW1 187 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 A0A1W2PPI3 338 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 DAPL1A0PJW8 107 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 AP4M1O00189 453 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 CD1AP06126 327 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 HCKP08631 526 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 GLIPR1P48060 266 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 NPBWR2P48146 333 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 RPS7P62081 194 aaKnown RBP11.28□□□□□ -0.6
CXCR4-203ENST00000466288 MRPL28Q13084 256 aaKnown RBP11.28□□□□□ -0.6
CXCR4-203ENST00000466288 FOXE3Q13461 319 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 HES1Q14469 280 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 CXorf66Q5JRM2 361 aaPredicted RBP11.28□□□□□ -0.6
CXCR4-203ENST00000466288 ELMOD2Q8IZ81 293 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 SYS1Q8N2H4 156 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 TOMM40LQ969M1 308 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 KCTD7Q96MP8 289 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 TM2D3Q9BRN9 247 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 CENPOQ9BU64 300 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 TTTY10Q9BZA0 68 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 GLS2Q9UI32 602 aa11.28□□□□□ -0.6
CXCR4-203ENST00000466288 LOC110117498-PIK3R3F6TDL0 507 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 GPX5O75715 221 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 ELANEP08246 267 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 CALCBP10092 127 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 ETV6P41212 452 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 PTGFRP43088 359 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 RORCP51449 518 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 AESQ08117 197 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 DIAPH2-AS1Q14236 149 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 C17orf58Q2M2W7 97 aa11.27□□□□□ -0.6
CXCR4-203ENST00000466288 LIPKQ5VXJ0 399 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms