RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 FAM90A16PA6NEW6 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A20PA6NIJ5 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A9PA6NNJ1 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A12PA8MX19 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A5PA8MXJ8 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 NPIPB11E5RHQ5 1161 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 H3BNX3 289 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 OGG1O15527 345 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 SPINT2O43291 252 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 RRP9O43818 475 aaKnown RBP6.2□□□□□ -1.42
CD44-211ENST00000442151 MMP23AO75900 390 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 OR7C1O76099 320 aaPredicted RBP6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A15PP0C7V4 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A13PP0C7W8 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A14PP0C7W9 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A24PP0C7X0 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 CGB3P0DN86 165 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 CGB7P0DN87 165 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 SOX2P48431 317 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 RIPK1Q13546 671 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 HABP2Q14520 560 aaPredicted RBP6.2□□□□□ -1.42
CD44-211ENST00000442151 CDK5R1Q15078 307 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 ZSCAN26Q16670 478 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 YIF1BQ5BJH7 314 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 KHDC1LQ5JSQ8 128 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 ATAD3CQ5T2N8 411 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 DDI2Q5TDH0 399 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 ZNF529Q6P280 563 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 LINC00311Q8N616 119 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 PACRGLQ8N7B6 248 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 OR51A4Q8NGJ6 313 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 OR2T10Q8NGZ9 312 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 OR10AC1Q8NH08 325 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 COQ2Q96H96 371 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 TMEM80Q96HE8 168 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 PDCD1LG2Q9BQ51 273 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 ISG20L2Q9H9L3 353 aaKnown RBP6.2□□□□□ -1.42
CD44-211ENST00000442151 KCNIP1Q9NZI2 227 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 GHRLQ9UBU3 117 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 KIF25Q9UIL4 384 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 SIRT4Q9Y6E7 314 aaPredicted RBP6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A10PA6NDY2 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 EFCAB10A6NFE3 127 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A7PA6NKC0 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 SERPINE3A8MV23 424 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 FAM90A23PA8MXZ1 464 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 GABRPO00591 440 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 MAPK3P27361 379 aaPredicted RBP6.2□□□□□ -1.42
CD44-211ENST00000442151 CD1BP29016 333 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 MYCNOSP40205 109 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 ZNF816Q0VGE8 651 aaPredicted RBP6.2□□□□□ -1.42
CD44-211ENST00000442151 LDLRAD2Q5SZI1 272 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 STEAP3Q658P3 488 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 SLC35E3Q7Z769 313 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 MOB3BQ86TA1 216 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 ZNF554Q86TJ5 538 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 LYG1Q8N1E2 194 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 SUMF2Q8NBJ7 301 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 MRGPRDQ8TDS7 321 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 MYDGFQ969H8 173 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 ARL11Q969Q4 196 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 TMEM106AQ96A25 262 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 SMIM19Q96E16 107 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 RASL11BQ9BPW5 248 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 VCXQ9H320 206 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 AMBNQ9NP70 447 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 TAS2R4Q9NYW5 299 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 DIMT1Q9UNQ2 313 aaKnown RBP6.2□□□□□ -1.42
CD44-211ENST00000442151 PSG11Q9UQ72 335 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 ERGIC3Q9Y282 383 aa6.2□□□□□ -1.42
CD44-211ENST00000442151 PKD1L1Q8TDX9 2849 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 TRAV24A0A0B4J272 114 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 A0A1W2PRX2 142 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 NUDT19A8MXV4 375 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 SDCBPO00560 298 aaPredicted RBP6.19□□□□□ -1.42
CD44-211ENST00000442151 HSPB6O14558 160 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 RGS11O94810 467 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 CD1AP06126 327 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 SNRNP70P08621 437 aaKnown RBP6.19□□□□□ -1.42
CD44-211ENST00000442151 OR5H8P0DN80 308 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 RBM11P57052 281 aaKnown RBP6.19□□□□□ -1.42
CD44-211ENST00000442151 Q499Y3 187 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 RSBN1Q5VWQ0 802 aaPredicted RBP6.19□□□□□ -1.42
CD44-211ENST00000442151 TEX38Q6PEX7 206 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 DHRSXQ8N5I4 330 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 PHF21AQ96BD5 680 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 PPIL3Q9H2H8 161 aaKnown RBP6.19□□□□□ -1.42
CD44-211ENST00000442151 TRAPPC2LQ9UL33 140 aa6.19□□□□□ -1.42
CD44-211ENST00000442151 NCBP2LA6PVI3 153 aaKnown RBP6.18□□□□□ -1.42
CD44-211ENST00000442151 AIPO00170 330 aa6.18□□□□□ -1.42
CD44-211ENST00000442151 AP4M1O00189 453 aa6.18□□□□□ -1.42
CD44-211ENST00000442151 UBBP0CG47 229 aa6.18□□□□□ -1.42
CD44-211ENST00000442151 SERPINA2P20848 420 aa6.18□□□□□ -1.42
CD44-211ENST00000442151 EBI3Q14213 229 aa6.18□□□□□ -1.42
CD44-211ENST00000442151 LTC4SQ16873 150 aa6.18□□□□□ -1.42
CD44-211ENST00000442151 PNLIPRP3Q17RR3 467 aa6.18□□□□□ -1.42
CD44-211ENST00000442151 CXorf66Q5JRM2 361 aaPredicted RBP6.18□□□□□ -1.42
CD44-211ENST00000442151 TGIF2LXQ8IUE1 241 aa6.18□□□□□ -1.42
CD44-211ENST00000442151 DRAM1Q8N682 238 aa6.18□□□□□ -1.42
CD44-211ENST00000442151 NKAIN3Q8N8D7 197 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms