RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TMEM104Q8NE00 496 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 OR10A7Q8NGE5 316 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 RFESDQ8TAC1 157 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 CCDC107Q8WV48 283 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 FAM46BQ96A09 425 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 FBLN5Q9UBX5 448 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 AMMECR1Q9Y4X0 333 aaPredicted RBP12.25□□□□□ -0.45
LIMS3-201ENST00000437679 PEX16Q9Y5Y5 336 aa12.25□□□□□ -0.45
LIMS3-201ENST00000437679 BUB1B-PAK6H3BSN5 160 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 AIPO00170 330 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 CHST1O43916 411 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 MPIG6BO95866 241 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 MT-ND4P03905 459 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 BRS3P32247 399 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 SSTR5P35346 364 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 KIR2DS4P43632 304 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 GABARAPL2P60520 117 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 SRSF4Q08170 494 aaKnown RBP12.24□□□□□ -0.45
LIMS3-201ENST00000437679 C1orf100Q5SVJ3 147 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 TMEM91Q6ZNR0 172 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 SLC16A12Q6ZSM3 486 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 TMEM219Q86XT9 240 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 OR2T6Q8NHC8 308 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 ARL11Q969Q4 196 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 Q96M66 194 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 MMP28Q9H239 520 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 ZNF696Q9H7X3 374 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 ETAA1Q9NY74 926 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 MGAM2Q2M2H8 2515 aa12.24□□□□□ -0.45
LIMS3-201ENST00000437679 J3QR06 171 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 DENRO43583 198 aaKnown RBP12.23□□□□□ -0.45
LIMS3-201ENST00000437679 MRPS14O60783 128 aaKnown RBP12.23□□□□□ -0.45
LIMS3-201ENST00000437679 GLAP06280 429 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 JUNBP17275 347 aaPredicted RBP12.23□□□□□ -0.45
LIMS3-201ENST00000437679 FUT3P21217 361 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 HTR2CP28335 458 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 TPTE2P1Q5T6R2 138 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 CCDC144NLQ6NUI1 221 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 C11orf88Q6PI97 169 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 CCBE1Q6UXH8 406 aaPredicted RBP12.23□□□□□ -0.45
LIMS3-201ENST00000437679 LEAP2Q969E1 77 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 CITED1Q99966 193 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 RAB9BQ9NP90 201 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 ACOT13Q9NPJ3 140 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 TRAPPC2LQ9UL33 140 aa12.23□□□□□ -0.45
LIMS3-201ENST00000437679 OOSP1A8MZH6 123 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 SLC22A1O15245 554 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 ORC5O43913 435 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 PDCD6O75340 191 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 CA11O75493 328 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 IGHV3-7P01780 117 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 VSIG8P0DPA2 414 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 CALRP27797 417 aaKnown RBP12.22□□□□□ -0.45
LIMS3-201ENST00000437679 MNDAP41218 407 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 GNG10P50151 68 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 FABP5Q01469 135 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 PRR31Q5SQ13 230 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 UTF1Q5T230 341 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 C6orf183Q5T699 404 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 SYT6Q5T7P8 510 aaPredicted RBP12.22□□□□□ -0.45
LIMS3-201ENST00000437679 SVOPQ8N4V2 548 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 OR6M1Q8NGM8 313 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 KCNG3Q8TAE7 436 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 RPEQ96AT9 228 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 TMEM59Q9BXS4 323 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 PLGRKTQ9HBL7 147 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 PSG11Q9UQ72 335 aa12.22□□□□□ -0.45
LIMS3-201ENST00000437679 UBE2QL1A1L167 161 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 LY6LH3BQJ8 138 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 C15orf65H3BRN8 121 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 SDCBPO00560 298 aaPredicted RBP12.21□□□□□ -0.45
LIMS3-201ENST00000437679 TIMM23O14925 209 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 BPNT1O95861 308 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 CD37P11049 281 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 RANBP1P43487 201 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 KRTAP10-3P60369 221 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 RPS27AP62979 156 aaKnown RBP12.21□□□□□ -0.45
LIMS3-201ENST00000437679 EMX1Q04741 257 aaPredicted RBP12.21□□□□□ -0.45
LIMS3-201ENST00000437679 MADCAM1Q13477 382 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 NKAPLQ5M9Q1 402 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 SIGIRRQ6IA17 410 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 OR10K2Q6IF99 312 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 TRAT1Q6PIZ9 186 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 OR52M1Q8NGK5 317 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 OR10X1Q8NGY0 326 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 OR4K15Q8NH41 348 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 CAPSLQ8WWF8 208 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 TOMM40LQ969M1 308 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 NEDD4LQ96PU5 975 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 YTHDF1Q9BYJ9 559 aaKnown RBP12.21□□□□□ -0.45
LIMS3-201ENST00000437679 PRSS22Q9GZN4 317 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 SIGLEC9Q9Y336 463 aa12.21□□□□□ -0.45
LIMS3-201ENST00000437679 RRP15Q9Y3B9 282 aaKnown RBP12.21□□□□□ -0.45
LIMS3-201ENST00000437679 AK6Q9Y3D8 172 aaKnown RBP12.21□□□□□ -0.45
LIMS3-201ENST00000437679 SLC17A2O00624 439 aa12.2□□□□□ -0.46
LIMS3-201ENST00000437679 SPINT2O43291 252 aa12.2□□□□□ -0.46
LIMS3-201ENST00000437679 PSMD7P51665 324 aa12.2□□□□□ -0.46
LIMS3-201ENST00000437679 EFNB2P52799 333 aa12.2□□□□□ -0.46
LIMS3-201ENST00000437679 RAB11BQ15907 218 aa12.2□□□□□ -0.46
LIMS3-201ENST00000437679 SSX1Q16384 188 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms