RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 MRPL48Q96GC5 212 aaKnown RBP2.94□□□□□ -1.94
VPS54-204ENST00000416400 NARS2Q96I59 477 aaKnown RBP2.94□□□□□ -1.94
VPS54-204ENST00000416400 MCEEQ96PE7 176 aa2.94□□□□□ -1.94
VPS54-204ENST00000416400 NKX6-2Q9C056 277 aaPredicted RBP2.94□□□□□ -1.94
VPS54-204ENST00000416400 XKR8Q9H6D3 395 aa2.94□□□□□ -1.94
VPS54-204ENST00000416400 TMEM138Q9NPI0 162 aa2.94□□□□□ -1.94
VPS54-204ENST00000416400 NIT2Q9NQR4 276 aa2.94□□□□□ -1.94
VPS54-204ENST00000416400 ZNF222Q9UK12 451 aa2.94□□□□□ -1.94
VPS54-204ENST00000416400 SAMHD1Q9Y3Z3 626 aaKnown RBP2.94□□□□□ -1.94
VPS54-204ENST00000416400 ALG5Q9Y673 324 aa2.94□□□□□ -1.94
VPS54-204ENST00000416400 TMEM2Q9UHN6 1383 aa2.94□□□□□ -1.94
VPS54-204ENST00000416400 FAM208AQ9UK61 1670 aaKnown RBP2.94□□□□□ -1.94
VPS54-204ENST00000416400 TNS3Q68CZ2 1445 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 RGPD1P0DJD0 1748 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 WNK3Q9BYP7 1800 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 MYH10P35580 1976 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 NWD1Q149M9 1564 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 MEIKINA0A087WXM9 373 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 IGHV3OR16-9A0A0B4J2B5 98 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 LOC285095A0A1B0GVY8 99 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 C7orf66A4D0T2 115 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 NAP1L6A6NFF2 107 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 HMSDA8MTL9 139 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 DNASE2O00115 360 aaPredicted RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 UPK1AO00322 258 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 SLC16A7O60669 478 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 REM1O75628 298 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 SCO1O75880 301 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 FADS2O95864 444 aaKnown RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 CSTAP01040 98 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 TRBC1P01850 177 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 APOC3P02656 99 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 CATP04040 527 aaKnown RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 RLN2P04090 185 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 OR8U9P0C7N5 309 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 PIPP12273 146 aaPredicted RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 NFYAP23511 347 aaPredicted RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 GADD45AP24522 165 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 AGTR1P30556 359 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 BMI1P35226 326 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 TGFBR2P37173 567 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 PPICP45877 212 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 MAP2K4P45985 399 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 PPOXP50336 477 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 RAB5CP51148 216 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 POLR2JP52435 117 aaKnown RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 TAS2R60P59551 318 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 AP3S2P59780 193 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 SNRPD2P62316 118 aaKnown RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 DYNLL1P63167 89 aaKnown RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 SKP1P63208 163 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 PSPHP78330 225 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 DEFA5Q01523 94 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 CYP24A1Q07973 514 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 SLAMF1Q13291 335 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 TAF1AQ15573 450 aaPredicted RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 HMGN3Q15651 99 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 C5orf64Q2M2E5 130 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 GCSAMLQ5JQS6 135 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 SAXO2Q658L1 398 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 OR2T5Q6IEZ7 315 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 EIF5AL1Q6IS14 154 aaKnown RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 ZFP2Q6ZN57 461 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 TAC4Q86UU9 113 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 CALHM1Q8IU99 346 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 Q8N402 240 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 OR4M1Q8NGD0 313 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 OR10W1Q8NGF6 305 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 OR2T4Q8NH00 348 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 OR2T29Q8NH02 315 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 OR8U1Q8NH10 309 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 COQ8AQ8NI60 647 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 SLC25A46Q96AG3 418 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 L3HYPDHQ96EM0 354 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 PYURFQ96I23 114 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 KCTD7Q96MP8 289 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 SCGB3A2Q96PL1 93 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 PFDN5Q99471 154 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 GPR22Q99680 433 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 MGLLQ99685 303 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 PITX2Q99697 317 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 HSD17B10Q99714 261 aaKnown RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 NDFIP1Q9BT67 221 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 BCL2L14Q9BZR8 327 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 OR51V1Q9H2C8 321 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 REEP1Q9H902 201 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 TMEM27Q9HBJ8 222 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 POLR3HQ9Y535 204 aaPredicted RBP2.93□□□□□ -1.94
VPS54-204ENST00000416400 V9GYQ6 96 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 MYH8P13535 1937 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 MYH13Q9UKX3 1938 aa2.93□□□□□ -1.94
VPS54-204ENST00000416400 NACAE9PAV3 2078 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 MYO5AQ9Y4I1 1855 aaKnown RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 PXDNQ92626 1479 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 DLG5Q8TDM6 1919 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 IGHV1-69DA0A0B4J2H0 117 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 A0A0D9SG52 128 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 A0A0J9YXV3 536 aa2.92□□□□□ -1.94
VPS54-204ENST00000416400 A0A1W2PQL4 384 aaPredicted RBP2.92□□□□□ -1.94
VPS54-204ENST00000416400 TMEM218A2RU14 115 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms