RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 FAM90A20PA6NIJ5 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 FAM90A7PA6NKC0 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 FAM90A22PA8MWA6 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 FAM90A12PA8MX19 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 FAM90A5PA8MXJ8 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 FAM90A23PA8MXZ1 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 LY6LH3BQJ8 138 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 AIPO00170 330 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 MT-ND4P03905 459 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 FAM90A15PP0C7V4 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 FAM90A13PP0C7W8 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 FAM90A14PP0C7W9 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 FAM90A24PP0C7X0 464 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 GZMHP20718 246 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 CD24P25063 80 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 CEACAM3P40198 252 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 TRAM1Q15629 374 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 TBCEQ15813 527 aaPredicted RBP11.91□□□□□ -0.5
LIMS4-201ENST00000413601 SIGIRRQ6IA17 410 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 OR10K2Q6IF99 312 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 OR9G1Q8NH87 305 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 UBALD1Q8TB05 177 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 CREB3L1Q96BA8 519 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 CYYR1Q96J86 154 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 MMP28Q9H239 520 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 RANBP3Q9H6Z4 567 aaPredicted RBP11.91□□□□□ -0.5
LIMS4-201ENST00000413601 GHRLQ9UBU3 117 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 PITPNC1Q9UKF7 332 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 PSG11Q9UQ72 335 aa11.91□□□□□ -0.5
LIMS4-201ENST00000413601 UBE2QL1A1L167 161 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 C15orf65H3BRN8 121 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 J3QR06 171 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 MPIG6BO95866 241 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 UBBP0CG47 229 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 VSIG8P0DPA2 414 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 FUT3P21217 361 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 GNG10P50151 68 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 FABP5Q01469 135 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 TPTE2P1Q5T6R2 138 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 OR10A7Q8NGE5 316 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 OR4K15Q8NH41 348 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 OR2T6Q8NHC8 308 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 ARL11Q969Q4 196 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 GFI1Q99684 422 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 CST11Q9H112 138 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 KCNK15Q9H427 330 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 ACOT13Q9NPJ3 140 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 ETAA1Q9NY74 926 aa11.9□□□□□ -0.5
LIMS4-201ENST00000413601 A0A1W2PPE3 182 aa11.89□□□□□ -0.51
LIMS4-201ENST00000413601 CD37P11049 281 aa11.89□□□□□ -0.51
LIMS4-201ENST00000413601 PSMA1P25786 263 aaKnown RBP11.89□□□□□ -0.51
LIMS4-201ENST00000413601 HTR2CP28335 458 aa11.89□□□□□ -0.51
LIMS4-201ENST00000413601 BRS3P32247 399 aa11.89□□□□□ -0.51
LIMS4-201ENST00000413601 EFNB2P52799 333 aa11.89□□□□□ -0.51
LIMS4-201ENST00000413601 EMX1Q04741 257 aaPredicted RBP11.89□□□□□ -0.51
LIMS4-201ENST00000413601 HABP2Q14520 560 aaPredicted RBP11.89□□□□□ -0.51
LIMS4-201ENST00000413601 SYT6Q5T7P8 510 aaPredicted RBP11.89□□□□□ -0.51
LIMS4-201ENST00000413601 ZNF367Q7RTV3 350 aa11.89□□□□□ -0.51
LIMS4-201ENST00000413601 ZNF702PQ9H963 129 aa11.89□□□□□ -0.51
LIMS4-201ENST00000413601 TRAPPC2LQ9UL33 140 aa11.89□□□□□ -0.51
LIMS4-201ENST00000413601 AK6Q9Y3D8 172 aaKnown RBP11.89□□□□□ -0.51
LIMS4-201ENST00000413601 IGHV3-43A0A0B4J1X8 118 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 SDCBPO00560 298 aaPredicted RBP11.88□□□□□ -0.51
LIMS4-201ENST00000413601 SLC22A1O15245 554 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 DENRO43583 198 aaKnown RBP11.88□□□□□ -0.51
LIMS4-201ENST00000413601 ORC5O43913 435 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 PDCD6O75340 191 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 ARL6IP5O75915 188 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 IGHV3-43DP0DP04 118 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 CALRP27797 417 aaKnown RBP11.88□□□□□ -0.51
LIMS4-201ENST00000413601 ARHGDIBP52566 201 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 GABARAPL2P60520 117 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 BLCAPP62952 87 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 QRFPP83859 136 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 UNC119Q13432 240 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 SSX1Q16384 188 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 FBLN7Q53RD9 439 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 NKAPLQ5M9Q1 402 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 FAM53AQ6NSI3 398 aaPredicted RBP11.88□□□□□ -0.51
LIMS4-201ENST00000413601 Q6ZS46 218 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 SLC16A12Q6ZSM3 486 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 KCNG3Q8TAE7 436 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 TOMM40LQ969M1 308 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 RPEQ96AT9 228 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 TMEM59Q9BXS4 323 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 Q9H521 79 aa11.88□□□□□ -0.51
LIMS4-201ENST00000413601 AMMECR1Q9Y4X0 333 aaPredicted RBP11.88□□□□□ -0.51
LIMS4-201ENST00000413601 NBEAL1Q6ZS30 2694 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 OOSP1A8MZH6 123 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 C12orf77C9JDV5 145 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 H3BUI4 141 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 TIMM23O14925 209 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 BPNT1O95861 308 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 GLAP06280 429 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 RCC1P18754 421 aaPredicted RBP11.87□□□□□ -0.51
LIMS4-201ENST00000413601 LOXL3P58215 753 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 RPS27AP62979 156 aaKnown RBP11.87□□□□□ -0.51
LIMS4-201ENST00000413601 MADCAM1Q13477 382 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 DIAPH2-AS1Q14236 149 aa11.87□□□□□ -0.51
LIMS4-201ENST00000413601 P2RY14Q15391 338 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms