RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 OR5B21A6NL26 309 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 LEUTXA8MZ59 168 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 CCSO14618 274 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 GEMIN2O14893 280 aaKnown RBP11.28□□□□□ -0.6
LIMS1-204ENST00000409441 CTSDP07339 412 aaPredicted RBP11.28□□□□□ -0.6
LIMS1-204ENST00000409441 SFTPBP07988 381 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 TNFRSF1AP19438 455 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 EFNA4P52798 201 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 GNG3P63215 75 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 PIGYQ3MUY2 71 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 FAM76BQ5HYJ3 339 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 KCTD9Q7L273 389 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 WDR86Q86TI4 376 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 CALHM1Q8IU99 346 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 KCNRGQ8N5I3 272 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 SCARB1Q8WTV0 552 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 MAFIPQ8WZ33 124 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 CYYR1Q96J86 154 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 SAP30LQ9HAJ7 183 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 POLQO75417 2590 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 USF3Q68DE3 2245 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 CACNA1DQ01668 2161 aa11.28□□□□□ -0.6
LIMS1-204ENST00000409441 IGKV1D-8A0A087WSZ0 117 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 LY6HO94772 140 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 PGAM2P15259 253 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 PAX1P15863 534 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 FUT3P21217 361 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 UBA52P62987 128 aaKnown RBP11.27□□□□□ -0.6
LIMS1-204ENST00000409441 SUPT4H1P63272 117 aaKnown RBP11.27□□□□□ -0.6
LIMS1-204ENST00000409441 TESK1Q15569 626 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 SRSF7Q16629 238 aaKnown RBP eCLIP11.27□□□□□ -0.6
LIMS1-204ENST00000409441 PRAMEF6Q5VXH4 476 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 ZNF660Q6AZW8 331 aaPredicted RBP11.27□□□□□ -0.6
LIMS1-204ENST00000409441 SLC25A26Q70HW3 274 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 MKXQ8IYA7 352 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 THAP6Q8TBB0 222 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 PPP1R1CQ8WVI7 109 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 CITED4Q96RK1 184 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 ZNF2Q9BSG1 426 aaPredicted RBP11.27□□□□□ -0.6
LIMS1-204ENST00000409441 HDHD3Q9BSH5 251 aaPredicted RBP11.27□□□□□ -0.6
LIMS1-204ENST00000409441 OR51I2Q9H344 312 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 ZNF286AQ9HBT8 521 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 TREM2Q9NZC2 230 aa11.27□□□□□ -0.6
LIMS1-204ENST00000409441 C5orf51A6NDU8 294 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 TMEM210A6NLX4 147 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 PTBP3O95758 552 aaKnown RBP11.27□□□□□ -0.61
LIMS1-204ENST00000409441 IGHV4-39P01824 125 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 OR5H8P0DN80 308 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 RPS2P15880 293 aaKnown RBP11.27□□□□□ -0.61
LIMS1-204ENST00000409441 COL8A2P25067 703 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 GATA4P43694 442 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 ATP5J2P56134 94 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 FGF12P61328 243 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 MPV17LQ2QL34 196 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 DHRS11Q6UWP2 260 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 Q6ZS49 121 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 ACOT7LQ6ZUV0 252 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 LINC00596Q86U02 117 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 MOGAT3Q86VF5 341 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 C11orf53Q8IXP5 236 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 NINJ1Q92982 152 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 SEC22AQ96IW7 307 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 GCM1Q9NP62 436 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 C12orf4Q9NQ89 552 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 UFSP2Q9NUQ7 469 aa11.27□□□□□ -0.61
LIMS1-204ENST00000409441 BEX4Q9NWD9 120 aaPredicted RBP11.27□□□□□ -0.61
LIMS1-204ENST00000409441 ITPR2Q14571 2701 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 ASH1LQ9NR48 2969 aaKnown RBP11.26□□□□□ -0.61
LIMS1-204ENST00000409441 IGHV1-69-2A0A0G2JMI3 117 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 FAM25EA8MYX2 175 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 LYNX1G3V0Z9 82 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 CDIPTO14735 213 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 LYNX1P0DP58 116 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 DAOP14920 347 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 GLRA1P23415 457 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 PSMB6P28072 239 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 HAAOP46952 286 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 AP2S1P53680 142 aaPredicted RBP11.26□□□□□ -0.61
LIMS1-204ENST00000409441 ZNF154Q13106 437 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 BAMBIQ13145 260 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 SLC9A3R2Q15599 337 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 DEFB113Q30KQ7 82 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 ZNF573Q86YE8 665 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 SCCPDHQ8NBX0 429 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 CCL17Q92583 94 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 ERGIC1Q969X5 290 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 MBD6Q96DN6 1003 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 PERPQ96FX8 193 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 CHMP1AQ9HD42 196 aaPredicted RBP11.26□□□□□ -0.61
LIMS1-204ENST00000409441 MED9Q9NWA0 146 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 PPP1R3CQ9UQK1 317 aa11.26□□□□□ -0.61
LIMS1-204ENST00000409441 NBPF19A0A087WUL8 3843 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 TRBV6-7A0A0A0MS04 114 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 KANTRA0A1W2PQU2 76 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 LRP5LA4QPB2 252 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 A6NLC8 198 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 BCL2L11O43521 198 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 RRASP10301 218 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 BCL3P20749 454 aa11.25□□□□□ -0.61
LIMS1-204ENST00000409441 RBMXP38159 391 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms