RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SLC25A10Q9UBX3 287 aaPredicted RBP6.39□□□□□ -1.39
SCN9A-202ENST00000409435 CACFD1Q9UGQ2 172 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 OTOFQ9HC10 1997 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 KNL1Q8NG31 2342 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 MGAMO43451 1857 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 LEUTXA8MZ59 168 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 M0R3E3 92 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 GP2P55259 537 aaKnown RBP6.39□□□□□ -1.39
SCN9A-202ENST00000409435 CLDN12P56749 244 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 ERVS71-1P61550 626 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 SRSF6Q13247 344 aaKnown RBP6.39□□□□□ -1.39
SCN9A-202ENST00000409435 PHLDA2Q53GA4 152 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 FAM78BQ5VT40 261 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 OR2L13Q8N349 312 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 FADS6Q8N9I5 356 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 OR10J5Q8NHC4 309 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 LINC00052Q96N35 136 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 SCN5AQ14524 2016 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 ZC3H12DA2A288 527 aaKnown RBP6.39□□□□□ -1.39
SCN9A-202ENST00000409435 PPP6CO00743 305 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 TIMM23O14925 209 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 SOX15O60248 233 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 SLC2A10O95528 541 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 PEX11BO96011 259 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 CST4P01036 141 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 CHRM2P08172 466 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 FAHP16930 419 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 SPATA45Q537H7 98 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF774Q6NX45 483 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 GPR32P1Q8NGA4 272 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 PFN4Q8NHR9 129 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 NEURL2Q9BR09 285 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 THBDP07204 575 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SLC6A1P30531 599 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 THBS4P35443 961 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 PMCHL1Q16048 86 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 AWAT1Q58HT5 328 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SLC35D3Q5M8T2 416 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 RPS4Y2Q8TD47 263 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 FAM3DQ96BQ1 224 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 ZG16BQ96DA0 208 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 HSD3B7Q9H2F3 369 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 NPTNQ9Y639 398 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 LAMA4Q16363 1823 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 TMEM30CPA0ZSE6 113 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SDCBPO00560 298 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SSSCA1O60232 199 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 IL18BPO95998 194 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 HIST1H1EP10412 219 aaKnown RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 UQCRFS1P47985 274 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 ERHP84090 104 aaKnown RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 FAM27D1Q5T7N8 215 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 FAHD1Q6P587 224 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 TRAT1Q6PIZ9 186 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 NIT1Q86X76 327 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 BVESQ8NE79 360 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SYT11Q9BT88 431 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 DERL1Q9BUN8 251 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 NDUFB11Q9NX14 153 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 OR5B21A6NL26 309 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 KLF7O75840 302 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 ATP5IP56385 69 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SLC35E4Q6ICL7 350 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SEZ6L2Q6UXD5 910 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 Q6ZS92 163 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 OLIG3Q7RTU3 272 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 LHFPL4Q7Z7J7 247 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 RNF133Q8WVZ7 376 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 GHSRQ92847 366 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 TMUB1Q9BVT8 246 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SDR39U1Q9NRG7 319 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 NAT8Q9UHE5 227 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 KLF2Q9Y5W3 355 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 FAM183AA6NL82 134 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 ARPC3O15145 178 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 IGHA2P01877 340 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 OR4E1P0C645 316 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 OR2T7P0C7T2 308 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 FUT6P51993 359 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 WNT3P56703 355 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 UBE2V2Q15819 145 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SMN1Q16637 294 aaKnown RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 C11orf87Q6NUJ2 197 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SCARF2Q96GP6 870 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF2Q9BSG1 426 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 CHRNA10Q9GZZ6 450 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 FOXJ3Q9UPW0 622 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.38□□□□□ -1.39
SCN9A-202ENST00000409435 C7orf72A4D263 438 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 B4DSR2 109 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 HSD17B6O14756 317 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 C1QL1O75973 258 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 CTXN2P0C2S0 81 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 LIMS3P0CW19 117 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 LIMS4P0CW20 117 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 CD40P25942 277 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 SPANXN5Q5MJ07 72 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 DRAM2Q6UX65 266 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF788Q6ZQV5 615 aa6.38□□□□□ -1.39
SCN9A-202ENST00000409435 LYG2Q86SG7 212 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 140.9 ms