RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 NTMQ9P121 344 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 A0A087X0M5 115 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 A0A1B0GX30 115 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 LIPT2A6NK58 231 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 IL11P20809 199 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 FGF9P31371 208 aaPredicted RBP12.02□□□□□ -0.49
COL4A1-201ENST00000375820 KRTCAP3Q53RY4 240 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 OVCH2Q7RTZ1 564 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 MYOZ3Q8TDC0 251 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 PTP4A1Q93096 173 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 MANBALQ9NQG1 85 aa12.02□□□□□ -0.49
COL4A1-201ENST00000375820 MAST2Q6P0Q8 1798 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 MMP9P14780 707 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 ROM1Q03395 351 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 EIF3IQ13347 325 aaKnown RBP12.01□□□□□ -0.49
COL4A1-201ENST00000375820 GGTLC2Q14390 218 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 IGSF23A1L1A6 192 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 ZNF324O75467 553 aaPredicted RBP12.01□□□□□ -0.49
COL4A1-201ENST00000375820 IL24Q13007 206 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 OR8G5Q8NG78 346 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 ZNF665Q9H7R5 613 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 PARP11Q9NR21 331 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 PPYP01298 95 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 EFNB2P52799 333 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 EWSR1Q01844 656 aaKnown RBP eCLIP12.01□□□□□ -0.49
COL4A1-201ENST00000375820 MDP1Q86V88 176 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 PCED1AQ9H1Q7 454 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 WNT16Q9UBV4 365 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 GABRA6Q16445 453 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 C11orf91Q3C1V1 193 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 TNFSF14O43557 240 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 RAC3P60763 192 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 RIGQ13278 110 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 SNRNP40Q96DI7 357 aaKnown RBP12.01□□□□□ -0.49
COL4A1-201ENST00000375820 STARD4Q96DR4 205 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 TMEM191AQ9H0A3 160 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 OR51B2Q9Y5P1 312 aa12.01□□□□□ -0.49
COL4A1-201ENST00000375820 TRAV8-7A0A075B6U6 113 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 MFSD2BA6NFX1 497 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 OR11H7Q8NGC8 314 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 MPC1Q9Y5U8 109 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 IGHV5-10-1A0A0J9YXX1 117 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 FFAR1O14842 300 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 CTSDP07339 412 aaPredicted RBP12□□□□□ -0.49
COL4A1-201ENST00000375820 CELA2AP08217 269 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 GPR35Q9HC97 309 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 M0R296 226 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 P2RY1P47900 373 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 MBD1Q9UIS9 605 aaPredicted RBP12□□□□□ -0.49
COL4A1-201ENST00000375820 CORTO00230 105 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 PCMT1P22061 227 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 TMEM50BP56557 158 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 IGSF11Q5DX21 431 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 APOBEC4Q8WW27 367 aaKnown RBP12□□□□□ -0.49
COL4A1-201ENST00000375820 CDX2Q99626 313 aaPredicted RBP12□□□□□ -0.49
COL4A1-201ENST00000375820 OPN3Q9H1Y3 402 aaPredicted RBP12□□□□□ -0.49
COL4A1-201ENST00000375820 SLC25A10Q9UBX3 287 aaPredicted RBP12□□□□□ -0.49
COL4A1-201ENST00000375820 CLDN18P56856 261 aa12□□□□□ -0.49
COL4A1-201ENST00000375820 CD82P27701 267 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 ATP6V1FQ16864 119 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 GBGT1Q8N5D6 347 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 OR5AU1Q8NGC0 362 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 ZPLD1Q8TCW7 415 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 SMPD2O60906 423 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 ADRA2AP08913 450 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 MEGF10Q96KG7 1140 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 TRAF4Q9BUZ4 470 aaPredicted RBP11.99□□□□□ -0.49
COL4A1-201ENST00000375820 DTX4Q9Y2E6 619 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 CLDN14O95500 239 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 PSG6Q00889 435 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 CCL13Q99616 98 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 IGLV3-16A0A075B6K0 115 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 OTX1P32242 354 aaPredicted RBP11.99□□□□□ -0.49
COL4A1-201ENST00000375820 HCP5Q6MZN7 132 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 ADAT3Q96EY9 351 aaPredicted RBP11.99□□□□□ -0.49
COL4A1-201ENST00000375820 PERPQ96FX8 193 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 RHBDD2Q6NTF9 364 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 VSTM2AQ8TAG5 236 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 GUCD1Q96NT3 240 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 GPHA2Q96T91 129 aa11.99□□□□□ -0.49
COL4A1-201ENST00000375820 IGHV3OR16-10A0A075B7F0 116 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 MEOX2P50222 304 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 ATG4DQ86TL0 474 aaPredicted RBP11.98□□□□□ -0.49
COL4A1-201ENST00000375820 TRIP11Q15643 1979 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 UBE2L6O14933 153 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 ABHD14BQ96IU4 210 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 IFITM10A6NMD0 228 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 LEUTXA8MZ59 168 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 H3BQ15 152 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 SPINT1O43278 529 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 KCNMB1Q16558 191 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 LYRM7Q5U5X0 104 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 DMKNQ6E0U4 476 aaPredicted RBP11.98□□□□□ -0.49
COL4A1-201ENST00000375820 SLC35E3Q7Z769 313 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 RPS4Y2Q8TD47 263 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 ZNF385AQ96PM9 386 aaKnown RBP11.98□□□□□ -0.49
COL4A1-201ENST00000375820 RSG1Q9BU20 258 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 ZIC3O60481 467 aa11.98□□□□□ -0.49
COL4A1-201ENST00000375820 MBPP02686 304 aaPredicted RBP11.98□□□□□ -0.49
COL4A1-201ENST00000375820 C1QCP02747 245 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms