RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PLA2G3Q9NZ20 509 aa10.4□□□□□ -0.75
CLIP3-201ENST00000360535 IGKV1-6A0A0C4DH72 117 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 SLC34A2O95436 690 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 LY86O95711 162 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 EIF3IQ13347 325 aaKnown RBP10.39□□□□□ -0.75
CLIP3-201ENST00000360535 DAZAP2Q15038 168 aaPredicted RBP10.39□□□□□ -0.75
CLIP3-201ENST00000360535 OR2B11Q5JQS5 317 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 LFNGQ8NES3 379 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 Q8WTZ3 238 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 NIPSNAP3BQ9BS92 247 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 Q9N2K0 584 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 LYRM2Q9NU23 88 aaPredicted RBP10.39□□□□□ -0.75
CLIP3-201ENST00000360535 ZNF503-AS2A6NEH8 195 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 CYB561P49447 251 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 RAB2AP61019 212 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 GFI1BQ5VTD9 330 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 LINC00696Q6ZRV3 163 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 VSIRQ9H7M9 311 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 LRFN1Q9P244 771 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 METTL1Q9UBP6 276 aaKnown RBP10.39□□□□□ -0.75
CLIP3-201ENST00000360535 PITX3O75364 302 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 SRP19P09132 144 aaKnown RBP10.39□□□□□ -0.75
CLIP3-201ENST00000360535 UCP3P55916 312 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 ERVFRD-1P60508 538 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 ZDHHC23Q8IYP9 409 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 CCDC54Q8NEL0 328 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 OR1A1Q9P1Q5 309 aa10.39□□□□□ -0.75
CLIP3-201ENST00000360535 LRRC3CA6NJW4 275 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 WDR1O75083 606 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 SCAF4O95104 1147 aaKnown RBP10.38□□□□□ -0.75
CLIP3-201ENST00000360535 IFNA5P01569 189 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 TRGC2P03986 189 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 VDAC1P21796 283 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 RAB1AP62820 205 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 OR8B8Q15620 311 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 ASCL4Q6XD76 172 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 STX12Q86Y82 276 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 THOC3Q96J01 351 aaKnown RBP10.38□□□□□ -0.75
CLIP3-201ENST00000360535 PFDN5Q99471 154 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 TOLLIPQ9H0E2 274 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 ZNF665Q9H7R5 613 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 LOC400499M0QZD8 3231 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 SIRPB1O00241 398 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 PGLYRP1O75594 196 aaPredicted RBP10.38□□□□□ -0.75
CLIP3-201ENST00000360535 SELEP16581 610 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 S100A2P29034 98 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 SRPXP78539 464 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 ICAM4Q14773 271 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 OR2T2Q6IF00 324 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 SPNS3Q6ZMD2 512 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 OR10J5Q8NHC4 309 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 KCNE4Q8WWG9 221 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 GPR146Q96CH1 333 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 TAAR9Q96RI9 348 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 DOK5Q9P104 306 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 CACNG5Q9UF02 275 aa10.38□□□□□ -0.75
CLIP3-201ENST00000360535 RHBDL1O75783 438 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TUSC2O75896 110 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 MMP7P09237 267 aaPredicted RBP10.37□□□□□ -0.75
CLIP3-201ENST00000360535 CA6P23280 308 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TRIM61Q5EBN2 209 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 SPANXN5Q5MJ07 72 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 OR8G2PQ6IF36 304 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 ODF3L1Q8IXM7 274 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 OR10D4PQ8NGN7 298 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 SCGB1C1Q8TD33 95 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 PLK3Q9H4B4 646 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TINAGQ9UJW2 476 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 RNF150Q9ULK6 438 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 IGHV2-5P01817 119 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TUBG1P23258 451 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 HOXA4Q00056 320 aaPredicted RBP10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TCEAL6Q6IPX3 200 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 HEPN1Q6WQI6 88 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 Q6ZSR3 168 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 NECAP1Q8NC96 275 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 MUCL1Q96DR8 90 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 GGACTQ9BVM4 153 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TMPRSS5Q9H3S3 457 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TUBA4BQ9H853 241 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TNRC18O15417 2968 aaPredicted RBP10.37□□□□□ -0.75
CLIP3-201ENST00000360535 MMP9P14780 707 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TLE4Q04727 773 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 Q6ZRM9 215 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 PPP1R32Q7Z5V6 425 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 LILRB2Q8N423 598 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 OR5T1Q8NG75 326 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 SIGLEC12Q96PQ1 595 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 SH2D2AQ9NP31 389 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 PILRBQ9UKJ0 227 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 TCFL5Q9UL49 500 aa10.37□□□□□ -0.75
CLIP3-201ENST00000360535 UCP2P55851 309 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 FGF12P61328 243 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 HIKESHIQ53FT3 197 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 ZNF880Q6PDB4 577 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 BEND4Q6ZU67 534 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 HLA-CQ95604 372 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 TVP23CQ96ET8 276 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 TMEM56Q96MV1 263 aa10.36□□□□□ -0.75
CLIP3-201ENST00000360535 TAAR3PQ9P1P4 343 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms