RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 AMELYQ99218 206 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 CHST5Q9GZS9 411 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 IL36GQ9NZH8 169 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 DTX4Q9Y2E6 619 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 ATP23Q9Y6H3 246 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 ZNF665Q9H7R5 613 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 SIAH2O43255 324 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 RBP4P02753 201 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 HSPB1P04792 205 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 PRSS53Q2L4Q9 553 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 Q6ZS52 159 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 OR2M7Q8NG81 312 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 NAGKQ9UJ70 344 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 RNF24Q9Y225 148 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 SPRY3O43610 288 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 C1orf53Q5VUE5 145 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 LRRC75AQ8NAA5 344 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 PLXNB2O15031 1838 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 DOCK3Q8IZD9 2030 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 S100A4P26447 101 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 G6PCP35575 357 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 R3HDM4Q96D70 268 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 RSG1Q9BU20 258 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 GGACTQ9BVM4 153 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 SARGQ9BW04 601 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 TNS1Q9HBL0 1735 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 TRAV39A0A0B4J263 110 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 HELTA6NFD8 242 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 FSTP19883 344 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 SERF2P84101 59 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 SFTPA1Q8IWL2 248 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 OR1P1Q8NH06 330 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 MISP3Q96FF7 219 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 PCGF1Q9BSM1 259 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 OR2W1Q9Y3N9 320 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 TGIF2-C20orf24A0A0A6YYL0 155 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 PPP1CCP36873 323 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 ZP1P60852 638 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 TMEM97Q5BJF2 176 aa17.1■□□□□ 0.33
CCDC88B-202ENST00000356786 OR2M5A3KFT3 312 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 CXorf65A6NEN9 183 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 LRRC3CA6NJW4 275 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 HKR1P10072 659 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 ORM2P19652 201 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 PTCRAQ6ISU1 281 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 ZADH2Q8N4Q0 377 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 MPC1Q9Y5U8 109 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 ATG2BQ96BY7 2078 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 LINC01387J3KSC0 135 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 UPK3AO75631 287 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 ATRAIDQ6UW56 229 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 ZNF738Q8NE65 137 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 TUBD1Q9UJT1 453 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 IGHV1OR21-1A0A087WYE8 117 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 A8MXK9 166 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 LINC01565O15544 149 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 ZNF207O43670 478 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 BCL3P20749 454 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 BRS3P32247 399 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 OR1C1Q15619 314 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 OR4F17Q8NGA8 305 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 EML2O95834 649 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 PRSS1P07477 247 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 PCP4P48539 62 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 PAFAH1B2P68402 229 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 CCL7P80098 99 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 PET117Q6UWS5 81 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 ZNF519Q8TB69 540 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 MAP1LC3CQ9BXW4 147 aa17.09■□□□□ 0.33
CCDC88B-202ENST00000356786 PSG2P11465 335 aa17.08■□□□□ 0.33
CCDC88B-202ENST00000356786 ANKRD55Q3KP44 614 aa17.08■□□□□ 0.33
CCDC88B-202ENST00000356786 KCNE5Q9UJ90 142 aa17.08■□□□□ 0.33
CCDC88B-202ENST00000356786 SP1P08047 785 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 HFEQ30201 348 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 RPP25Q9BUL9 199 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 P4HTMQ9NXG6 502 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 METTL1Q9UBP6 276 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 SRSF10O75494 262 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 TDHQ8IZJ6 230 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 APCDD1LQ8NCL9 501 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 OR2D3Q8NGH3 330 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 KISS1RQ969F8 398 aaPredicted RBP17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 CFHR5Q9BXR6 569 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 CRISPLD2Q9H0B8 497 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 RAC3P60763 192 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 MEF2BQ02080 365 aaPredicted RBP17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 HLA-BQ31612 363 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 WDR25Q64LD2 544 aaPredicted RBP17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 DDA1Q9BW61 102 aa17.08■□□□□ 0.32
CCDC88B-202ENST00000356786 IGKV1D-16P01601 117 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 HOXC4P09017 264 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 RAB7AP51149 207 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 ABHD14AQ9BUJ0 271 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 TREM2Q9NZC2 230 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 TGIF1Q15583 401 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 MOB3BQ86TA1 216 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 WFDC8Q8IUA0 241 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 IP6K3Q96PC2 410 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 RND3P61587 244 aa17.07■□□□□ 0.32
CCDC88B-202ENST00000356786 UNQ9370/PRO34162Q6UXP9 181 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms