RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 KIR2DL2P43627 348 aaPredicted RBP11.07□□□□□ -0.64
SDC3-201ENST00000336798 RAC3P60763 192 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 PET117Q6UWS5 81 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 VN1R4Q7Z5H5 301 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 VSTM2AQ8TAG5 236 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 ZNF502Q8TBZ5 544 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 OIT3Q8WWZ8 545 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 ASB13Q8WXK3 278 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 PAGE4O60829 102 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 DRD3P35462 400 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 ELOBQ15370 118 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 LDLRAD3Q86YD5 345 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 ADAD2Q8NCV1 583 aaKnown RBP11.07□□□□□ -0.64
SDC3-201ENST00000336798 C1RLQ9NZP8 487 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 DUXBA0A1W2PPF3 345 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 PSG2P11465 335 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 IER3P46695 156 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 COL5A1-AS1Q5SY13 56 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 MDP1Q86V88 176 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 SNRNP40Q96DI7 357 aaKnown RBP11.07□□□□□ -0.64
SDC3-201ENST00000336798 HDHD3Q9BSH5 251 aaPredicted RBP11.07□□□□□ -0.64
SDC3-201ENST00000336798 CES1P1Q9UKY3 287 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 IGHV3OR16-10A0A075B7F0 116 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 ZNF124Q15973 351 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 OR10G8Q8NGN5 311 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 OR6X1Q8NH79 312 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 MS4A3Q96HJ5 214 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 TMEM167BQ9NRX6 74 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 IGSF23A1L1A6 192 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 MFSD2BA6NFX1 497 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 FFAR1O14842 300 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 CD81P60033 236 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 CLEC18BQ6UXF7 455 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 DPPA3Q6W0C5 159 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 OR2Y1Q8NGV0 311 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 OR2H1Q9GZK4 316 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 FRRS1LQ9P0K9 344 aa11.07□□□□□ -0.64
SDC3-201ENST00000336798 PPP1CCP36873 323 aaKnown RBP11.06□□□□□ -0.64
SDC3-201ENST00000336798 SLC35B1P78383 322 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 RIGQ13278 110 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 WDR73Q6P4I2 378 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 SLC52A3Q9NQ40 469 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 COX6B1P14854 86 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 ID1P41134 155 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 RHBDD2Q6NTF9 364 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 GUCD1Q96NT3 240 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 OR4C12Q96R67 309 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 SLC17A5Q9NRA2 495 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 NAT8Q9UHE5 227 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 KCNE1BA0A087WTH5 132 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 LNP1A1A4G5 178 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 TMEM218A2RU14 115 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 SMAD7O15105 426 aaKnown RBP11.06□□□□□ -0.64
SDC3-201ENST00000336798 PF4V1P10720 104 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 BTF3P20290 206 aaKnown RBP11.06□□□□□ -0.64
SDC3-201ENST00000336798 LY6EQ16553 131 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 PRSS54Q6PEW0 395 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 OVCH2Q7RTZ1 564 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 PCED1AQ9H1Q7 454 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 GPR35Q9HC97 309 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 LPAR3Q9UBY5 353 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 FUT9Q9Y231 359 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 OR51B2Q9Y5P1 312 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 C16orf97H3BN30 126 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 PEX11BO96011 259 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 CD82P27701 267 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 DDTP30046 118 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 NMUP48645 174 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 TMEM255AQ5JRV8 349 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 NUBPLQ8TB37 319 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 NUDT16L1Q9BRJ7 211 aaKnown RBP11.06□□□□□ -0.64
SDC3-201ENST00000336798 MIEN1Q9BRT3 115 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 LIPT2A6NK58 231 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 BSXQ3C1V8 233 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 TMEM251Q8N6I4 163 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 MRPL24Q96A35 216 aaKnown RBP11.06□□□□□ -0.64
SDC3-201ENST00000336798 ADTRPQ96IZ2 230 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 SNX22Q96L94 193 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 CCL13Q99616 98 aa11.06□□□□□ -0.64
SDC3-201ENST00000336798 CACNA1SQ13698 1873 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 A0A1B0GV72 72 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 C19orf48Q6RUI8 117 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 OR8G5Q8NG78 346 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 PERPQ96FX8 193 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 TMEM191AQ9H0A3 160 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 ANXA10Q9UJ72 324 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 NRXN3Q9Y4C0 1643 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 MYH14Q7Z406 1995 aaKnown RBP11.05□□□□□ -0.64
SDC3-201ENST00000336798 NKX2-6A6NCS4 301 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 LGALSLQ3ZCW2 172 aaPredicted RBP11.05□□□□□ -0.64
SDC3-201ENST00000336798 SSX8Q7RTT4 187 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 A0A1B0GUL6 1792 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 PLAUP00749 431 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 OR10J1P30954 320 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 GPR6P46095 362 aaPredicted RBP11.05□□□□□ -0.64
SDC3-201ENST00000336798 DLK1P80370 383 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 ADIPOQQ15848 244 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 ATP6V1FQ16864 119 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 C19orf54Q5BKX5 351 aa11.05□□□□□ -0.64
SDC3-201ENST00000336798 ASCL5Q7RTU5 278 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms