RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ZNF735P0CB33 412 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 PMP22Q01453 160 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 AESQ08117 197 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 LRRC75BQ2VPJ9 315 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 OR5AP2Q8NGF4 316 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 ADAMTS17Q8TE56 1095 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 STRCP1A6NGW2 1772 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 WNK2Q9Y3S1 2297 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 C7orf72A4D263 438 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 NQO2P16083 231 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 CD33P20138 364 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 DEFA6Q01524 100 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 TWIST1Q15672 202 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 WDR73Q6P4I2 378 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 VWA1Q6PCB0 445 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 OR4B1Q8NGF8 309 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 LHFPL5Q8TAF8 219 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 ALKBH7Q9BT30 221 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-217ENST00000637988 ARRDC5A6NEK1 342 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 RFPL4AA6NLU0 287 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 RFPL4AL1F8VTS6 287 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 RER1O15258 196 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 HOXA3O43365 443 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-217ENST00000637988 PSCAO43653 123 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 PDGFAP04085 211 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 OR5AC1P0C628 307 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 APOBEC3AP31941 199 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-217ENST00000637988 CCL8P80075 99 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 PRICKLE4Q2TBC4 344 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 PRSS36Q5K4E3 855 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 UNQ5815/PRO19632Q6UWF5 114 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 B3GNT9Q6UX72 402 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 C12orf54Q6X4T0 127 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 LAX1Q8IWV1 398 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 MOGAT1Q96PD6 335 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 ABHD14AQ9BUJ0 271 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 PRDM7Q9NQW5 492 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 NPAP1Q9NZP6 1156 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 ARFGEF3Q5TH69 2177 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 TCRBP04435 133 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 APELAP0DMC3 54 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 GPX2P18283 190 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 OPRL1P41146 370 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 NUDT10Q8NFP7 164 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 AQP10Q96PS8 301 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 SLC25A33Q9BSK2 321 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 SEC11CQ9BY50 192 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 SPNS1Q9H2V7 528 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 PLEKHB1Q9UF11 243 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-217ENST00000637988 CADP27708 2225 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 TRAV30A0A087WSZ9 112 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 NKX2-8O15522 239 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 PRKNO60260 465 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-217ENST00000637988 CLDN14O95500 239 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 COL9A1P20849 921 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 SPRED3Q2MJR0 410 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 MANBALQ9NQG1 85 aa5.4□□□□□ -1.55
SCN1A-217ENST00000637988 RBFOX1Q9NWB1 397 aaKnown RBP5.4□□□□□ -1.55
SCN1A-217ENST00000637988 POM121CA8CG34 1229 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 SYNGR1O43759 233 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 PDCD6O75340 191 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 CDK2AP2O75956 126 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 TGFAP01135 160 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 GHRHP01286 108 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 HOXB1P14653 301 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-217ENST00000637988 COL8A1P27658 744 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 RNASEKQ6P5S7 137 aaKnown RBP5.39□□□□□ -1.55
SCN1A-217ENST00000637988 DEGS2Q6QHC5 323 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 ABHD3Q8WU67 409 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 ASB10Q8WXI3 467 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 SLC25A46Q96AG3 418 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 RAXQ9Y2V3 346 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 IGKV3D-15A0A087WSY6 115 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM238LA0A1B0GVL6 79 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 A6NJY4 79 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 IGKV3-15P01624 115 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 NAT2P11245 290 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 M6PRP20645 277 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 TGFBR1P36897 503 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 SLC6A12P48065 614 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 SRSF9Q13242 221 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCN1A-217ENST00000637988 SPCS2Q15005 226 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 PRSS8Q16651 343 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 KIRREL2Q6UWL6 708 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 TSPAN32Q96QS1 320 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 OR2V2Q96R30 315 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 OPN3Q9H1Y3 402 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-217ENST00000637988 RNF122Q9H9V4 155 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 HSPB8Q9UJY1 196 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 PPIAL4CA0A0B4J2A2 164 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 KIAA1324LA8MWY0 1029 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-217ENST00000637988 PPIAL4GP0DN37 164 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 MALP21145 153 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 CCR6P51684 374 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 GP2P55259 537 aaKnown RBP5.39□□□□□ -1.55
SCN1A-217ENST00000637988 CACNG7P62955 275 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 GALNT14Q96FL9 552 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 FAAP24Q9BTP7 215 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 C20orf27Q9GZN8 174 aa5.39□□□□□ -1.55
SCN1A-217ENST00000637988 GPR35Q9HC97 309 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms