RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 CHST1O43916 411 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 VSIG10L2P0DP72 767 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 GTF2F2P13984 249 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 JUNBP17275 347 aaPredicted RBP9.37□□□□□ -0.91
CLN3-257ENST00000637110 MAPK3P27361 379 aaPredicted RBP9.37□□□□□ -0.91
CLN3-257ENST00000637110 BRS3P32247 399 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 GDNFP39905 211 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 CEACAM3P40198 252 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 KIR2DS4P43632 304 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 KCNJ3P48549 501 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 RBM11P57052 281 aaKnown RBP9.37□□□□□ -0.91
CLN3-257ENST00000637110 RPS11P62280 158 aaKnown RBP eCLIP9.37□□□□□ -0.91
CLN3-257ENST00000637110 MED22Q15528 200 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 LDLRAD2Q5SZI1 272 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 KPRPQ5T749 579 aaPredicted RBP9.37□□□□□ -0.91
CLN3-257ENST00000637110 AWAT2Q6E213 333 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 GLIPR1L1Q6UWM5 242 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 ZNF485Q8NCK3 441 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 OR13A1Q8NGR1 328 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 RFESDQ8TAC1 157 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 PLPPR1Q8TBJ4 325 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 PIFOQ8TCI5 191 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 NRG4Q8WWG1 115 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 CREB3L1Q96BA8 519 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 DERL3Q96Q80 235 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 TMED9Q9BVK6 235 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 RANBP3Q9H6Z4 567 aaPredicted RBP9.37□□□□□ -0.91
CLN3-257ENST00000637110 ZNF286AQ9HBT8 521 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 CALYQ9NYX4 217 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 IL36GQ9NZH8 169 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 FOXJ3Q9UPW0 622 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 TPRKBQ9Y3C4 175 aa9.37□□□□□ -0.91
CLN3-257ENST00000637110 TRBV5-7A0A0A0MS05 114 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 A0A1W2PP11 408 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 A6NDX4 124 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 G3V4G9 280 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 GPX5O75715 221 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 IGHV3-7P01780 117 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 HSMCR30P0CW71 290 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 FSTP19883 344 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 LOXL3P58215 753 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 DOC2BQ14184 412 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 C17orf58Q2M2W7 97 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 MPV17LQ2QL34 196 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 RSBN1Q5VWQ0 802 aaPredicted RBP9.36□□□□□ -0.91
CLN3-257ENST00000637110 C11orf88Q6PI97 169 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 CCBE1Q6UXH8 406 aaPredicted RBP9.36□□□□□ -0.91
CLN3-257ENST00000637110 LINC00596Q86U02 117 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 C11orf44Q8N8P7 122 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 OR4P4Q8NGL7 312 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 CCDC107Q8WV48 283 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 THRSPQ92748 146 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 CDCA4Q9BXL8 241 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 PRSS22Q9GZN4 317 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 CCDC90BQ9GZT6 254 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 FKBP14Q9NWM8 211 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 IDI2-AS1Q9NZ38 188 aa9.36□□□□□ -0.91
CLN3-257ENST00000637110 TMEM30CPA0ZSE6 113 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 MCRIP1C9JLW8 97 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 CRTAPO75718 401 aaPredicted RBP9.35□□□□□ -0.91
CLN3-257ENST00000637110 IL1AP01583 271 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 PRB2P02812 416 aaPredicted RBP9.35□□□□□ -0.91
CLN3-257ENST00000637110 CD1AP06126 327 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 CSF1P09603 554 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 CD24P25063 80 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 MNDAP41218 407 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 GNG10P50151 68 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 BDH1Q02338 343 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 HERPUD1Q15011 391 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 SPHARQ15513 63 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 HLA-DRB5Q30154 266 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 ACSM3Q53FZ2 586 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 MS4A15Q8N5U1 240 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 KLHDC1Q8N7A1 406 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 Q8NFD4 153 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 OR9G1Q8NH87 305 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 LEAP2Q969E1 77 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 RPEQ96AT9 228 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 KIRREL1Q96J84 757 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 OR5M11Q96RB7 305 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 SELENOIQ9C0D9 397 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 NCOR1P1Q9H4R4 102 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 BANF2Q9H503 90 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 ZNF581Q9P0T4 197 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 PLXNB1O43157 2135 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 TENM3Q9P273 2699 aa9.35□□□□□ -0.91
CLN3-257ENST00000637110 MEGF11A6BM72 1044 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 BUB1B-PAK6H3BSN5 160 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 AIPO00170 330 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 RGS10O43665 173 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 GZMHP20718 246 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 CD34P28906 385 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 SSTR5P35346 364 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 DYNLT3P51808 116 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 EFNB2P52799 333 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 HABP2Q14520 560 aaPredicted RBP9.34□□□□□ -0.91
CLN3-257ENST00000637110 INSL4Q14641 139 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 NHLRC3Q5JS37 347 aa9.34□□□□□ -0.91
CLN3-257ENST00000637110 RBM48Q5RL73 367 aaKnown RBP9.34□□□□□ -0.91
CLN3-257ENST00000637110 TPTE2P1Q5T6R2 138 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms