RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 Q6P435 159 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 BEND4Q6ZU67 534 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 FOXRED2Q8IWF2 684 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 BARX1Q9HBU1 254 aaPredicted RBP13.28□□□□□ -0.28
CLN3-251ENST00000636853 TMEM100Q9NV29 134 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 TRBV6-7A0A0A0MS04 114 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 IGKV1-6A0A0C4DH72 117 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 OR5H1A6NKK0 313 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 TRDCB7Z8K6 153 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 PROB1E7EW31 1015 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 MLNRO43193 412 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 SLC34A2O95436 690 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 CRYABP02511 175 aaKnown RBP13.28□□□□□ -0.28
CLN3-251ENST00000636853 RCC1P18754 421 aaPredicted RBP13.28□□□□□ -0.28
CLN3-251ENST00000636853 FABP6P51161 128 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 S100A10P60903 97 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 IL15RAQ13261 267 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 IAH1Q2TAA2 248 aaPredicted RBP13.28□□□□□ -0.28
CLN3-251ENST00000636853 C1orf185Q5T7R7 199 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 GGNBP1Q5YKI7 109 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 ATRAIDQ6UW56 229 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 RELL2Q8NC24 303 aaPredicted RBP13.28□□□□□ -0.28
CLN3-251ENST00000636853 LRRC46Q96FV0 321 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 RSRP1Q9BUV0 290 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 POLDIP2Q9Y2S7 368 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 ATP23Q9Y6H3 246 aa13.28□□□□□ -0.28
CLN3-251ENST00000636853 TEX46H3BTG2 121 aa13.27□□□□□ -0.28
CLN3-251ENST00000636853 SIRPB1O00241 398 aa13.27□□□□□ -0.28
CLN3-251ENST00000636853 TK1P04183 234 aa13.27□□□□□ -0.28
CLN3-251ENST00000636853 ERVK11-1P61568 191 aa13.27□□□□□ -0.28
CLN3-251ENST00000636853 HOXA4Q00056 320 aaPredicted RBP13.27□□□□□ -0.28
CLN3-251ENST00000636853 PRSS54Q6PEW0 395 aa13.27□□□□□ -0.28
CLN3-251ENST00000636853 ZNF474Q6S9Z5 364 aaPredicted RBP13.27□□□□□ -0.28
CLN3-251ENST00000636853 OR8G5Q8NG78 346 aa13.27□□□□□ -0.28
CLN3-251ENST00000636853 SECTM1Q8WVN6 248 aa13.27□□□□□ -0.28
CLN3-251ENST00000636853 GALNT14Q96FL9 552 aa13.27□□□□□ -0.28
CLN3-251ENST00000636853 ABHD17AQ96GS6 310 aa13.27□□□□□ -0.28
CLN3-251ENST00000636853 NKX6-2Q9C056 277 aaPredicted RBP13.27□□□□□ -0.28
CLN3-251ENST00000636853 APC2O95996 2303 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 IGHV2OR16-5A0A0B4J2B6 119 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 KIR2DS1A0A191URI9 304 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 MSGN1A6NI15 193 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 MKRN2OSH3BPM6 223 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 NXPH2O95156 264 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 PGA5P0DJD9 388 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 KIR2DS4P43632 304 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 KIR2DS1Q14954 304 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 UNQ6126/PRO20091Q6UXV3 157 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 LILRB1Q8NHL6 650 aaPredicted RBP13.27□□□□□ -0.29
CLN3-251ENST00000636853 NRIP2Q9BQI9 281 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 IFT22Q9H7X7 185 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 SLC25A15Q9Y619 301 aa13.27□□□□□ -0.29
CLN3-251ENST00000636853 TRAV39A0A0B4J263 110 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 F5H0A9 414 aaPredicted RBP13.26□□□□□ -0.29
CLN3-251ENST00000636853 TIMM8AO60220 97 aaPredicted RBP13.26□□□□□ -0.29
CLN3-251ENST00000636853 DIRAS3O95661 229 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 OR2H2O95918 312 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 IFNA21P01568 189 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 GNRHRP30968 328 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 PAN3Q58A45 887 aaKnown RBP13.26□□□□□ -0.29
CLN3-251ENST00000636853 FAM74A1Q5RGS3 127 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 ZNF826PQ6ZT77 177 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 LYZL2Q7Z4W2 148 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 GLYATL2Q8WU03 294 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 SYT3Q9BQG1 590 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 PIGMQ9H3S5 423 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 MSL2Q9HCI7 577 aa13.26□□□□□ -0.29
CLN3-251ENST00000636853 IGKV1D-13A0A0B4J2D9 117 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 ZNF98A6NK75 572 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 NUPL2O15504 423 aaKnown RBP13.25□□□□□ -0.29
CLN3-251ENST00000636853 PHF1O43189 567 aaPredicted RBP13.25□□□□□ -0.29
CLN3-251ENST00000636853 IGKV1-13P0DP09 117 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 Q8IYB0 196 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 GTF3AQ92664 365 aaKnown RBP13.25□□□□□ -0.29
CLN3-251ENST00000636853 TP53RKQ96S44 253 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 GPHA2Q96T91 129 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 SCNM1Q9BWG6 230 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 RIMS4Q9H426 269 aaPredicted RBP13.25□□□□□ -0.29
CLN3-251ENST00000636853 RHOFQ9HBH0 211 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 WASF3Q9UPY6 502 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 TP53TG5Q9Y2B4 290 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 MEMO1Q9Y316 297 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 RAB19A4D1S5 217 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 SLC33A1O00400 549 aaPredicted RBP13.25□□□□□ -0.29
CLN3-251ENST00000636853 LYL1P12980 280 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 ZNF83P51522 516 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 SPIN3Q5JUX0 258 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 FAM180AQ6UWF9 173 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 LIAT1Q6ZQX7 453 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 Q6ZR03 302 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 CCDC71LQ8N9Z2 235 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 S100PBPQ96BU1 408 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 MSI2Q96DH6 328 aaKnown RBP13.25□□□□□ -0.29
CLN3-251ENST00000636853 SUCNR1Q9BXA5 334 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 BCL2L14Q9BZR8 327 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 AMDHD2Q9Y303 409 aa13.25□□□□□ -0.29
CLN3-251ENST00000636853 ANKRD11Q6UB99 2663 aaPredicted RBP13.25□□□□□ -0.29
CLN3-251ENST00000636853 TMEM210A6NLX4 147 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 H7C2Y5 167 aa13.24□□□□□ -0.29
CLN3-251ENST00000636853 MPPED1O15442 326 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 137.7 ms