RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 OR5K2Q8NHB8 316 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 LILRB4Q8NHJ6 448 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 AGR3Q8TD06 166 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 KCTD4Q8WVF5 259 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RTN4IP1Q8WWV3 396 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TFGQ92734 400 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RNASE6Q93091 150 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 EEF1AKMT3Q96AZ1 226 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM159Q96B96 161 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 S100PBPQ96BU1 408 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 FLYWCH2Q96CP2 140 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CCDC126Q96EE4 140 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DCUN1D1Q96GG9 259 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PPP1R36Q96LQ0 422 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RILPQ96NA2 401 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 WFIKKN1Q96NZ8 548 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 GSDMAQ96QA5 445 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TSPAN32Q96QS1 320 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 LYSMD1Q96S90 227 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 HSD17B10Q99714 261 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SH3GL1Q99961 368 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 MICU1Q9BPX6 476 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 KCNS3Q9BQ31 491 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DOHHQ9BU89 302 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 MED18Q9BUE0 208 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 MS4A8Q9BY19 250 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF717Q9BY31 904 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PARD6BQ9BYG5 372 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 TTTY10Q9BZA0 68 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 MRPL37Q9BZE1 423 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ULBP2Q9BZM5 246 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ROPN1BQ9BZX4 212 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PARP12Q9H0J9 701 aaKnown RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 OR51B5Q9H339 312 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 NIPAL2Q9H841 368 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 LRRC40Q9H9A6 602 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 EDA2RQ9HAV5 297 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ANKHQ9HCJ1 492 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 RETNQ9HD89 108 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CHRAC1Q9NRG0 131 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 C14orf105Q9NVL8 296 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 NLE1Q9NVX2 485 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 MAT2BQ9NZL9 334 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 DUX4Q9UBX2 424 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 OPN4Q9UHM6 478 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 NUP50Q9UKX7 468 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 BLOC1S6Q9UL45 172 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 ING4Q9UNL4 249 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 PSG8Q9UQ74 426 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 C15orf41Q9Y2V0 281 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 KLF13Q9Y2Y9 288 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 SIGLEC9Q9Y336 463 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 POLR3HQ9Y535 204 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 CHCHD2Q9Y6H1 151 aaPredicted RBP0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 NBEAL2Q6ZNJ1 2754 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 LYSTQ99698 3801 aa0.6□□□□□ -2.31
SMARCB1-209ENST00000635578 HERC2O95714 4834 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 PLECQ15149 4684 aaKnown RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 PCLOQ9Y6V0 5065 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 HUWE1Q7Z6Z7 4374 aaKnown RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 VWFP04275 2813 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 HECTD4Q9Y4D8 3996 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 TRAV39A0A0B4J263 110 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 LOC285095A0A1B0GVY8 99 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 SMCO3A2RU48 225 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 ISPDA4D126 451 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 DPRXA6NFQ7 191 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 SLC22A20A6NK97 555 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 SMIM23A6NLE4 172 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 CLDN24A6NM45 220 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 OR5K4A6NMS3 321 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 E7EQL1 145 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 LRRN3E7EW58 273 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 H7C1C5 153 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 GOLGA8RI6L899 631 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 APOC4-APOC2K7ER74 178 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 L7N2F9 121 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 PSMD12O00232 456 aaPredicted RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 FOXE1O00358 373 aaPredicted RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 PRMT5O14744 637 aaPredicted RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 LIN7AO14910 233 aaPredicted RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 PSIP1O75475 530 aaKnown RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 CCNKO75909 580 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 CLPXO76031 633 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 GLSO94925 669 aaPredicted RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 CDRT1O95170 752 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 VAPBO95292 243 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 NSA2O95478 260 aaKnown RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 TMEM50AO95807 157 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 HLA-DQA1P01909 254 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 KRT14P02533 472 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 APOC2P02655 101 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 APCSP02743 223 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 OPN1SWP03999 348 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 CATP04040 527 aaKnown RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 EIF4EP06730 217 aaKnown RBP0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 IL3P08700 152 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 SLC35G6P0C7Q6 338 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF688P0C7X2 276 aa0.59□□□□□ -2.31
SMARCB1-209ENST00000635578 OR5H8P0DN80 308 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms