RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GLP1RP43220 463 aa16.86■□□□□ 0.29
CLN3-240ENST00000631023 RAB12Q6IQ22 244 aa16.86■□□□□ 0.29
CLN3-240ENST00000631023 C16orf87Q6PH81 154 aa16.86■□□□□ 0.29
CLN3-240ENST00000631023 PLPPR1Q8TBJ4 325 aa16.86■□□□□ 0.29
CLN3-240ENST00000631023 TMEM59Q9BXS4 323 aa16.86■□□□□ 0.29
CLN3-240ENST00000631023 TMEM133Q9H2Q1 129 aa16.86■□□□□ 0.29
CLN3-240ENST00000631023 RCC2Q9P258 522 aaKnown RBP16.86■□□□□ 0.29
CLN3-240ENST00000631023 PEX16Q9Y5Y5 336 aa16.86■□□□□ 0.29
CLN3-240ENST00000631023 KBTBD11-OT1A0A1B0GTJ5 212 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 TMEM30CPA0ZSE6 113 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 BTBD17A6NE02 478 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 ARG1P05089 322 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 GLAP06280 429 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 ARSBP15848 533 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 FUT3P21217 361 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 IER3P46695 156 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 DYNC1I2Q13409 638 aaKnown RBP16.85■□□□□ 0.29
CLN3-240ENST00000631023 NEDD8Q15843 81 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 RAB11BQ15907 218 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 SYT6Q5T7P8 510 aaPredicted RBP16.85■□□□□ 0.29
CLN3-240ENST00000631023 GCDHQ92947 438 aaPredicted RBP16.85■□□□□ 0.29
CLN3-240ENST00000631023 GFI1Q99684 422 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 ZNRD1Q9P1U0 126 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 STUB1Q9UNE7 303 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 SSR3Q9UNL2 185 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 STAB1Q9NY15 2570 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 GZMHP20718 246 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 PRAMEF5Q5TYX0 476 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 C22orf42Q6IC83 251 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 BRICD5Q6PL45 260 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 BEND2Q8NDZ0 799 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 TSPAN14Q8NG11 270 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 OR13A1Q8NGR1 328 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 CLEC7AQ9BXN2 247 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 VCX3AQ9NNX9 186 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 TNFRSF19Q9NS68 423 aa16.85■□□□□ 0.29
CLN3-240ENST00000631023 TBL2Q9Y4P3 447 aaKnown RBP16.85■□□□□ 0.29
CLN3-240ENST00000631023 A0A087WXM4 84 aa16.84■□□□□ 0.29
CLN3-240ENST00000631023 IGHV2-26A0A0B4J1V2 119 aa16.84■□□□□ 0.29
CLN3-240ENST00000631023 MMP23AO75900 390 aa16.84■□□□□ 0.29
CLN3-240ENST00000631023 FGF9P31371 208 aaPredicted RBP16.84■□□□□ 0.29
CLN3-240ENST00000631023 ZNF626Q68DY1 528 aa16.84■□□□□ 0.29
CLN3-240ENST00000631023 OR10K2Q6IF99 312 aa16.84■□□□□ 0.29
CLN3-240ENST00000631023 RTN4RL2Q86UN3 420 aa16.84■□□□□ 0.29
CLN3-240ENST00000631023 TMEM14DPA8MWL7 114 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 CA11O75493 328 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 IGHV4-59P01825 116 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 CGB3P0DN86 165 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 CGB7P0DN87 165 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 OMGP23515 440 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 RPS27AP62979 156 aaKnown RBP16.83■□□□□ 0.28
CLN3-240ENST00000631023 P2RY14Q15391 338 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 C17orf58Q2M2W7 97 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 ZNF497Q6ZNH5 498 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 OR2W3Q7Z3T1 314 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 ABHD12Q8N2K0 398 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 MRGPRDQ8TDS7 321 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 NEDD4LQ96PU5 975 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 URM1Q9BTM9 101 aaKnown RBP16.83■□□□□ 0.28
CLN3-240ENST00000631023 MEGF9Q9H1U4 602 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 ETAA1Q9NY74 926 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 CALYQ9NYX4 217 aa16.83■□□□□ 0.28
CLN3-240ENST00000631023 ODF3BA8MYP8 253 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 AIPO00170 330 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 PDCD6O75340 191 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 CRYBA1P05813 215 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 RAB3BP20337 219 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 QRFPP83859 136 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 OR5R1Q8NH85 324 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 C17orf50Q8WW18 174 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 FAM3DQ96BQ1 224 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 MALSU1Q96EH3 234 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 TM2D1Q9BX74 207 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 CHIAQ9BZP6 476 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 LINC00574Q9H8X3 128 aa16.82■□□□□ 0.28
CLN3-240ENST00000631023 TXNL4BQ9NX01 149 aaKnown RBP16.82■□□□□ 0.28
CLN3-240ENST00000631023 TMEM89A2RUT3 159 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 IL1AP01583 271 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 MT-ND4P03905 459 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 UNC119Q13432 240 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 AANATQ16613 207 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 MINOS1Q5TGZ0 78 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 SIGIRRQ6IA17 410 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 OR51D1Q8NGF3 324 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 ZNF596Q8TC21 504 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 DYRK2Q92630 601 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 AJUBAQ96IF1 538 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 SSX3Q99909 188 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 STEAP1Q9UHE8 339 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 MINOS1-NBL1R4GNA1 71 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 HKR1P10072 659 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 NFYBP25208 207 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 CD34P28906 385 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 PRRX1P54821 245 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 NKAPLQ5M9Q1 402 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 LHFPL4Q7Z7J7 247 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 OR10A7Q8NGE5 316 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 KIRREL1Q96J84 757 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 ZNF696Q9H7X3 374 aa16.81■□□□□ 0.28
CLN3-240ENST00000631023 RAB9BQ9NP90 201 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms