RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 Q8N7P7 452 aa15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 DCSTAMPQ9H295 470 aa15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 PLEKHJ1Q9NW61 149 aa15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 ETV7Q9Y603 341 aa15.7■□□□□ 0.1
SQSTM1-216ENST00000626660 TRAV40A0A0B4J280 105 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 SOCS1O15524 211 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 RBP4P02753 201 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 PRTN3P24158 256 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 GLP1RP43220 463 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 EFNB2P52799 333 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 ERVFRD-1P60508 538 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 PLA2G7Q13093 441 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 NCR3LG1Q68D85 454 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 ZNF497Q6ZNH5 498 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 C6orf201Q7Z4U5 140 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 ZNF565Q8N9K5 539 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 CORO2AQ92828 525 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 ATG5Q9H1Y0 275 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 SIRT7Q9NRC8 400 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 TAS2R3Q9NYW6 316 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 ABRACLQ9P1F3 81 aa15.69■□□□□ 0.1
SQSTM1-216ENST00000626660 C17orf98A8MV24 154 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 SCGNO76038 276 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 PAHP00439 452 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 FSHBP01225 129 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 DLX6P56179 175 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 Q6ZTK2 550 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 TCF23Q7RTU1 214 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 NDNFQ8TB73 568 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 LHX4Q969G2 390 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 KCTD12Q96CX2 325 aaKnown RBP15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 FAAP24Q9BTP7 215 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 HEXA-AS1Q9H8Q6 139 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 UNKLQ9H9P5 680 aaKnown RBP15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 NUP50Q9UKX7 468 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 HSF4Q9ULV5 492 aa15.68■□□□□ 0.1
SQSTM1-216ENST00000626660 ZNF729A6NN14 1252 aaPredicted RBP15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 MT-ND4P03905 459 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 FAM157CP0CG43 387 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 RORCP51449 518 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 GUCA2AQ02747 115 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 KLF17Q5JT82 389 aaPredicted RBP15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 OR13A1Q8NGR1 328 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 OR10R2Q8NGX6 335 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 PHF21AQ96BD5 680 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 RAB3CQ96E17 227 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 SULT4A1Q9BR01 284 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 RHBDL2Q9NX52 303 aa15.67■□□□□ 0.1
SQSTM1-216ENST00000626660 IGHV3OR16-10A0A075B7F0 116 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 CCDC160A6NGH7 325 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 FOXI3A8MTJ6 420 aaPredicted RBP15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 CLPXO76031 633 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 IGHV4-38-2P0DP08 117 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 EPHA1P21709 976 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 BPIFB3P59826 476 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 ZNF782Q6ZMW2 699 aaPredicted RBP15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 OR5H6Q8NGV6 325 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 MRGPRDQ8TDS7 321 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 CCDC107Q8WV48 283 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 DYRK2Q92630 601 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 ARHGAP5-AS1Q96IT6 56 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 PECRQ9BY49 303 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 MS4A7Q9GZW8 240 aaPredicted RBP15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 CHMP1AQ9HD42 196 aaPredicted RBP15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 TRAPPC2LQ9UL33 140 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 SPATA2Q9UM82 520 aa15.66■□□□□ 0.1
SQSTM1-216ENST00000626660 CENPVL3A0A0U1RRI6 287 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 KBTBD11-OT1A0A1B0GTJ5 212 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 IGHV1-8P0DP01 117 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 GZMHP20718 246 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 FPR2P25090 351 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 TMEM50BP56557 158 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 ARL6IP1Q15041 203 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 C6orf183Q5T699 404 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 TRAT1Q6PIZ9 186 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 GAPTQ8N292 157 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 C11orf42Q8N5U0 333 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 OR4K15Q8NH41 348 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 ACOT12Q8WYK0 555 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 AP3S1Q92572 193 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 ISOC1Q96CN7 298 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 RIMS4Q9H426 269 aaPredicted RBP15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 RAB9BQ9NP90 201 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 CALYQ9NYX4 217 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 SESN1Q9Y6P5 492 aa15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 ANK3Q12955 4377 aaKnown RBP15.65■□□□□ 0.1
SQSTM1-216ENST00000626660 TRAV39A0A0B4J263 110 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 IGHV1-69DA0A0B4J2H0 117 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 RAB27BO00194 218 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 IGHV1-69P01742 117 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 CDK2P24941 298 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 SOX6P35712 828 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 MRPS15P82914 257 aaKnown RBP15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 KLRD1Q13241 179 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 DYNC1I2Q13409 638 aaKnown RBP15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 SPCS2Q15005 226 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 MOGAT2Q3SYC2 334 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 PRAMEF5Q5TYX0 476 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 OR52W1Q6IF63 320 aa15.64■□□□□ 0.09
SQSTM1-216ENST00000626660 HEPN1Q6WQI6 88 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms