RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SCN2BO60939 215 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 NDUFS6O75380 124 aaKnown RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 FCN3O75636 299 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 STK16O75716 305 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 UGT2B17O75795 530 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 BRI3O95415 125 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 CYB5R3P00387 301 aaPredicted RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 CD55P08174 381 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 IVDP26440 423 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 DCKP27707 260 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 GPR183P32249 361 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 HAAOP46952 286 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 DLX1P56177 255 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 BLCAPP62952 87 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 H3F3AP84243 136 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 KLRD1Q13241 179 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 DGCR6Q14129 220 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 LAGE3Q14657 143 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 MAPRE2Q15555 327 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 CEACAM16Q2WEN9 425 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 SLC22A6Q4U2R8 563 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 TMEM255AQ5JRV8 349 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 FAM201AQ5SY85 155 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 GPR107Q5VW38 600 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 OR8G2PQ6IF36 304 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 CEMP1Q6PRD7 247 aaPredicted RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 SLC25A47Q6Q0C1 308 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 CEACAM19Q7Z692 300 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 ISCA2Q86U28 154 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 SELENOHQ8IZQ5 122 aaKnown RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 LINC01561Q8N1V8 128 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 LRRC75AQ8NAA5 344 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 ZNRF4Q8WWF5 429 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 HPSE2Q8WWQ2 592 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 EXOSC8Q96B26 276 aaKnown RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 C2orf48Q96LS8 159 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 TSSK3Q96PN8 268 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 KCNA7Q96RP8 456 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 NAPGQ99747 312 aaPredicted RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 SLC35A5Q9BS91 424 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 OR11A1Q9GZK7 315 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 OR51M1Q9H341 326 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 GLIPR2Q9H4G4 154 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 UBQLN4Q9NRR5 601 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 INTS9Q9NV88 658 aaKnown RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 ZNF229Q9UJW7 825 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 PPP1R3CQ9UQK1 317 aa3.28□□□□□ -1.88
LINC00540-201ENST00000611481 KLK5Q9Y337 293 aaPredicted RBP3.28□□□□□ -1.88
LINC00540-201ENST00000611481 TNCP24821 2201 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 MUC2Q02817 5179 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 TRBV7-9A0A0J9YWB2 115 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 A0A1B0GVI7 797 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 A0A1W2PQD3 144 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 A0A1W2PS18 150 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 RTL8CO15255 209 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 SURF4O15260 269 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 SIVA1O15304 175 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 HSBP1O75506 76 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 GPIP06744 558 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 PSMB6P28072 239 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 MPV17P39210 176 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 VHLP40337 213 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 TAS2R39P59534 338 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 SLC35A1P78382 337 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 PMS2P3Q13401 168 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 TSNQ15631 228 aaKnown RBP3.27□□□□□ -1.89
LINC00540-201ENST00000611481 ZNF404Q494X3 552 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 UNC50Q53HI1 259 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 FAM27D1Q5T7N8 215 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 LCE3AQ5TA76 89 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 NOXRED1Q6NXP6 359 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 MTERF4Q7Z6M4 381 aaKnown RBP3.27□□□□□ -1.89
LINC00540-201ENST00000611481 CYP4Z1Q86W10 505 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 TPRX1Q8N7U7 411 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 ZNF614Q8N883 585 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 KLHL30-AS1Q8NEE0 82 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 SLC30A7Q8NEW0 376 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 OR10H4Q8NGA5 316 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 OR52H1Q8NGJ2 320 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 FAM76AQ8TAV0 307 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 TM4SF18Q96CE8 201 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 ATP5SQ99766 215 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 OVOL2Q9BRP0 275 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 PYGO2Q9BRQ0 406 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 FAIM2Q9BWQ8 316 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 EBPLQ9BY08 206 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 PLEKHA3Q9HB20 300 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 TMEM181Q9P2C4 612 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 ABCD2Q9UBJ2 740 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 KLK11Q9UBX7 282 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 KIF25Q9UIL4 384 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 POFUT2Q9Y2G5 429 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 HDGFL3Q9Y3E1 203 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 SAR1BQ9Y6B6 198 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 FAT4Q6V0I7 4981 aa3.27□□□□□ -1.89
LINC00540-201ENST00000611481 C11orf98E9PRG8 122 aa3.26□□□□□ -1.89
LINC00540-201ENST00000611481 H3BMQ9 156 aa3.26□□□□□ -1.89
LINC00540-201ENST00000611481 H3BNH8 94 aa3.26□□□□□ -1.89
LINC00540-201ENST00000611481 H3BSH0 61 aa3.26□□□□□ -1.89
LINC00540-201ENST00000611481 RPL36A-HNRNPH2H7BZ11 118 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms