RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	SYS1	Q8N2H4	156 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	OR52I1	Q8NGK6	324 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ZNF581	Q9P0T4	197 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ZNF281	Q9Y2X9	895 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	IGHV3-72	A0A0B4J1Y9	119 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	IL1A	P01583	271 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	IGKV1D-33	P01593	117 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	IGKV1-33	P01594	117 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	CGB3	P0DN86	165 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	CGB7	P0DN87	165 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	GABRB1	P18505	474 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	PXT1	Q8NFP0	134 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	NEK7	Q8TDX7	302 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	CCDC107	Q8WV48	283 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	CPNE2	Q96FN4	548 aa	Predicted RBP	13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	DPCD	Q9BVM2	203 aa	Predicted RBP	13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	PCDHB16	Q9NRJ7	776 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM118A	Q9NWS6	357 aa		13.94	□□□□□ -0.18
SHKBP1-223	ENST00000600552		A0A1W2PPI3	338 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	NCBP2L	A6PVI3	153 aa	Known RBP	13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	OR7C1	O76099	320 aa	Predicted RBP	13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	RAB25	P57735	213 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	IL13RA2	Q14627	380 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ATAD3C	Q5T2N8	411 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	RSBN1	Q5VWQ0	802 aa	Predicted RBP	13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ELP2	Q6IA86	826 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	C8orf86	Q6ZUL3	223 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	THNSL2	Q86YJ6	484 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	MRPL41	Q8IXM3	137 aa	Known RBP	13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	SUMF2	Q8NBJ7	301 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	OR51D1	Q8NGF3	324 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	RHOXF1	Q8NHV9	184 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	HAVCR2	Q8TDQ0	301 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	DPF1	Q92782	380 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ORAI1	Q96D31	301 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	S100A13	Q99584	98 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	SLC29A1	Q99808	456 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	JAM3	Q9BX67	310 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ST3GAL6	Q9Y274	331 aa		13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	RPL36	Q9Y3U8	105 aa	Known RBP	13.93	□□□□□ -0.18
SHKBP1-223	ENST00000600552	IGHV3-43	A0A0B4J1X8	118 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	LOC100130705	A0A1B0GUX0	176 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A18P	A6NE21	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A16P	A6NEW6	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A20P	A6NIJ5	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A9P	A6NNJ1	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A12P	A8MX19	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A5P	A8MXJ8	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	MPZL2	O60487	215 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	CSTB	P04080	98 aa	Known RBP	13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A15P	P0C7V4	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A13P	P0C7W8	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A14P	P0C7W9	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM90A24P	P0C7X0	464 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	IGHV3-43D	P0DP04	118 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	SERPINA2	P20848	420 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	RPL23A	P62750	156 aa	Known RBP	13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	RAB40B	Q12829	278 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	MRPL28	Q13084	256 aa	Known RBP	13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	KLHL22	Q53GT1	634 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	C11orf87	Q6NUJ2	197 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ZFP1	Q6P2D0	407 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	SLC35E3	Q7Z769	313 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	C5orf56	Q8N8D9	126 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	LINC00482	Q8N8I6	264 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	KLHL30-AS1	Q8NEE0	82 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	CHPT1	Q8WUD6	406 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	RGP1	Q92546	391 aa	Predicted RBP	13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	DUX3	Q96PT4	197 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	C9orf16	Q9BUW7	83 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	METTL9	Q9H1A3	318 aa		13.92	□□□□□ -0.18
SHKBP1-223	ENST00000600552	LINC01548	A6NM66	108 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552		E9PQ18	207 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	CCRL2	O00421	344 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	CD2	P06729	351 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	RAB7A	P51149	207 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	PPP3R1	P63098	170 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	SLC35B1	P78383	322 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	SMN1	Q16637	294 aa	Known RBP	13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	VAX1	Q5SQQ9	334 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	DDI2	Q5TDH0	399 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	XAF1	Q6GPH4	301 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FAM53A	Q6NSI3	398 aa	Predicted RBP	13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	GPR148	Q8TDV2	347 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ARL11	Q969Q4	196 aa		13.91	□□□□□ -0.18
SHKBP1-223	ENST00000600552	TMEM30CP	A0ZSE6	113 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	NPIPB11	E5RHQ5	1161 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	SDCBP	O00560	298 aa	Predicted RBP	13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	HSD17B6	O14756	317 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	GEMIN2	O14893	280 aa	Known RBP	13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	DUS4L	O95620	317 aa	Known RBP	13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	LIMS3	P0CW19	117 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	LIMS4	P0CW20	117 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ZNF93	P35789	620 aa	Predicted RBP	13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	ETV3L	Q6ZN32	361 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	OR2W3	Q7Z3T1	314 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	FOXRED2	Q8IWF2	684 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	OR8H3	Q8N146	312 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	OR13C5	Q8NGS8	318 aa		13.9	□□□□□ -0.18
SHKBP1-223	ENST00000600552	OR52N1	Q8NH53	320 aa		13.9	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms