RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 APOL3O95236 402 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 CYB5AP00167 134 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 IL1AP01583 271 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 IGF1P05019 195 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 LYL1P12980 280 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 ZNF44P15621 663 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 PPIFP30405 207 aaKnown RBP4.75□□□□□ -1.65
VRK3-220ENST00000600259 POLR2IP36954 125 aaKnown RBP4.75□□□□□ -1.65
VRK3-220ENST00000600259 GYS2P54840 703 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 F2RL1P55085 397 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 RAB25P57735 213 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 CBX1P83916 185 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 RUNX1Q01196 453 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 HES1Q14469 280 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 ATXN7L3Q14CW9 347 aaPredicted RBP4.75□□□□□ -1.65
VRK3-220ENST00000600259 ZNF260Q3ZCT1 412 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 TP53I3Q53FA7 332 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 KLHL22Q53GT1 634 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 HSP90B2PQ58FF3 399 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 TMEM244Q5VVB8 128 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 RSBN1Q5VWQ0 802 aaPredicted RBP4.75□□□□□ -1.65
VRK3-220ENST00000600259 KDM4DQ6B0I6 523 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 ELP2Q6IA86 826 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 ASCL4Q6XD76 172 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 FOXRED2Q8IWF2 684 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 IZUMO1Q8IYV9 350 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 LINC00311Q8N616 119 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 ZNF565Q8N9K5 539 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 OR10A7Q8NGE5 316 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 OR51A4Q8NGJ6 313 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 OR5D18Q8NGL1 313 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 OR8U1Q8NH10 309 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 PLPPR1Q8TBJ4 325 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 EME1Q96AY2 570 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 CCDC124Q96CT7 223 aaKnown RBP4.75□□□□□ -1.65
VRK3-220ENST00000600259 LRGUKQ96M69 825 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 OPALINQ96PE5 141 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 CITED4Q96RK1 184 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 HSPB9Q9BQS6 159 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 ADI1Q9BV57 179 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 EDA2RQ9HAV5 297 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 LIN7CQ9NUP9 197 aaKnown RBP4.75□□□□□ -1.65
VRK3-220ENST00000600259 ING3Q9NXR8 418 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 H2AFY2Q9P0M6 372 aaPredicted RBP4.75□□□□□ -1.65
VRK3-220ENST00000600259 ZNF581Q9P0T4 197 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 WARS2Q9UGM6 360 aaKnown RBP4.75□□□□□ -1.65
VRK3-220ENST00000600259 ZNF580Q9UK33 172 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 MYRFQ9Y2G1 1151 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 AMMECR1Q9Y4X0 333 aaPredicted RBP4.75□□□□□ -1.65
VRK3-220ENST00000600259 SMAD5-AS1Q9Y6J3 95 aa4.75□□□□□ -1.65
VRK3-220ENST00000600259 MEIKINA0A087WXM9 373 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 FAM90A10PA6NDY2 464 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 H0YJX3 145 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 C15orf65H3BRN8 121 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 MPZL2O60487 215 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 IGLV1-40P01703 118 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 GAPDHP04406 335 aaKnown RBP4.74□□□□□ -1.65
VRK3-220ENST00000600259 HCKP08631 526 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 FRMD6-AS1P0C7T7 363 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 UBCP0CG48 685 aaKnown RBP4.74□□□□□ -1.65
VRK3-220ENST00000600259 HOXB6P17509 224 aaKnown RBP4.74□□□□□ -1.65
VRK3-220ENST00000600259 CALB2P22676 271 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 CD1BP29016 333 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 C21orf33P30042 268 aaPredicted RBP4.74□□□□□ -1.65
VRK3-220ENST00000600259 INSL3P51460 131 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 CCR9P51686 369 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 GABPB1Q06547 395 aaPredicted RBP4.74□□□□□ -1.65
VRK3-220ENST00000600259 TMED1Q13445 227 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 CXorf66Q5JRM2 361 aaPredicted RBP4.74□□□□□ -1.65
VRK3-220ENST00000600259 ZNF529Q6P280 563 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 OVCH2Q7RTZ1 564 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 GID4Q8IVV7 300 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 Q8N1Y9 231 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 FAM71E2Q8N5Q1 922 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 ZNF491Q8N8L2 437 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 C8orf31Q8N9H6 132 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 PXT1Q8NFP0 134 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 OR11H1Q8NG94 326 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 OR2T10Q8NGZ9 312 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 CNIH3Q8TBE1 160 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 MRGPRDQ8TDS7 321 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 C4orf3Q8WVX3 66 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 DCUN1D4Q92564 292 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 KCTD7Q96MP8 289 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 S1PR3Q99500 378 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 TM2D3Q9BRN9 247 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 THTPAQ9BU02 230 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 GNB4Q9HAV0 340 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 TPSG1Q9NRR2 321 aa4.74□□□□□ -1.65
VRK3-220ENST00000600259 SIRT4Q9Y6E7 314 aaPredicted RBP4.74□□□□□ -1.65
VRK3-220ENST00000600259 MAGEA13PA6NCF6 341 aa4.73□□□□□ -1.65
VRK3-220ENST00000600259 TRIM64CA6NLI5 447 aa4.73□□□□□ -1.65
VRK3-220ENST00000600259 NCBP2LA6PVI3 153 aaKnown RBP4.73□□□□□ -1.65
VRK3-220ENST00000600259 J3QL48 77 aa4.73□□□□□ -1.65
VRK3-220ENST00000600259 HSD17B6O14756 317 aa4.73□□□□□ -1.65
VRK3-220ENST00000600259 FAM107AO95990 144 aa4.73□□□□□ -1.65
VRK3-220ENST00000600259 TMEM225BP0DP42 221 aa4.73□□□□□ -1.65
VRK3-220ENST00000600259 DBTP11182 482 aaKnown RBP4.73□□□□□ -1.65
VRK3-220ENST00000600259 SPNP16150 400 aa4.73□□□□□ -1.65
VRK3-220ENST00000600259 GZMHP20718 246 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms