RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 EXOSC1Q9Y3B2 195 aaKnown RBP9.94□□□□□ -0.82
TRIM28-212ENST00000597995 PCDHGB5Q9Y5G0 923 aa9.94□□□□□ -0.82
TRIM28-212ENST00000597995 A0A087X0M5 115 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 TRAV24A0A0B4J272 114 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 TRBV5-5A0A0J9YX44 114 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 A0A1B0GX30 115 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 PSMB11A5LHX3 300 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 LY6LH3BQJ8 138 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 BUB1B-PAK6H3BSN5 160 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 TOR1AO14656 332 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 DEGS1O15121 323 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 CSN2P05814 226 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 CGB3P0DN86 165 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 CGB7P0DN87 165 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 IGFBP3P17936 291 aaPredicted RBP9.93□□□□□ -0.82
TRIM28-212ENST00000597995 CDK2P24941 298 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 SLC6A1P30531 599 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 CAPGP40121 348 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 MNDAP41218 407 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 OR3A4PP47883 348 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 MTNR1BP49286 362 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 THBS3P49746 956 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 PRRX1P54821 245 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 ST3GAL4Q11206 333 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 C17orf58Q2M2W7 97 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 HLA-DRB5Q30154 266 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 TPTE2P1Q5T6R2 138 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 PRAMEF5Q5TYX0 476 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 CCDC144NLQ6NUI1 221 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 TMPRSS11AQ6ZMR5 421 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 SATL1Q86VE3 508 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 THNSL2Q86YJ6 484 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 OR51T1Q8NGJ9 327 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 OR52N1Q8NH53 320 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 TNFAIP8L1Q8WVP5 186 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 GHSRQ92847 366 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 TMEM106AQ96A25 262 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 PGLYRP3Q96LB9 341 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 PPIL3Q9H2H8 161 aaKnown RBP9.93□□□□□ -0.82
TRIM28-212ENST00000597995 ING3Q9NXR8 418 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 RYR3Q15413 4870 aa9.93□□□□□ -0.82
TRIM28-212ENST00000597995 IRGMA1A4Y4 181 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 ODAMA1E959 279 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM172BPA6NC97 362 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 MAGEA13PA6NCF6 341 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A18PA6NE21 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A16PA6NEW6 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A20PA6NIJ5 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A9PA6NNJ1 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A12PA8MX19 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A5PA8MXJ8 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 CDRT1O95170 752 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A15PP0C7V4 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A13PP0C7W8 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A14PP0C7W9 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM90A24PP0C7X0 464 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 FAM106CPP0CH98 169 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 MYL12AP19105 171 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 C21orf33P30042 268 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-212ENST00000597995 RPL23AP62750 156 aaKnown RBP9.92□□□□□ -0.82
TRIM28-212ENST00000597995 ATXN7L3Q14CW9 347 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-212ENST00000597995 PIGYQ3MUY2 71 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 ETV3LQ6ZN32 361 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 CHST4Q8NCG5 386 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 SETD9Q8NE22 299 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 OR4D6Q8NGJ1 314 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 NR1H4Q96RI1 486 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-212ENST00000597995 ZNF286AQ9HBT8 521 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 PCDHB16Q9NRJ7 776 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 ZFP57Q9NU63 452 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 NKX1-2Q9UD57 310 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-212ENST00000597995 PSORS1C1Q9UIG5 152 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 HSPE1-MOB4S4R3N1 261 aa9.92□□□□□ -0.82
TRIM28-212ENST00000597995 TRAV8-7A0A075B6U6 113 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 SH2D7A6NKC9 451 aaPredicted RBP9.91□□□□□ -0.82
TRIM28-212ENST00000597995 H0YJX3 145 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 HSPB6O14558 160 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 GPX5O75715 221 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 NHLRC4P0CG21 123 aaPredicted RBP9.91□□□□□ -0.82
TRIM28-212ENST00000597995 MYCNOSP40205 109 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 PTGFRP43088 359 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 C9orf152Q5JTZ5 239 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 KRBOX4Q5JUW0 171 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 UNQ9370/PRO34162Q6UXP9 181 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 C8orf59Q8N0T1 100 aaPredicted RBP9.91□□□□□ -0.82
TRIM28-212ENST00000597995 COMMD1Q8N668 190 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 PLPPR1Q8TBJ4 325 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 CHPT1Q8WUD6 406 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 GPER1Q99527 375 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 TMEM138Q9NPI0 162 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 PLCXD1Q9NUJ7 323 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 FKBP14Q9NWM8 211 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 MOB4Q9Y3A3 225 aa9.91□□□□□ -0.82
TRIM28-212ENST00000597995 TRBV5-7A0A0A0MS05 114 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 A0A1W2PP11 408 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 A0A1W2PPK0 400 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 EFCAB10A6NFE3 127 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 ZNF729A6NN14 1252 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-212ENST00000597995 MAGEB3O15480 346 aa9.9□□□□□ -0.82
TRIM28-212ENST00000597995 CD2P06729 351 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms