RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 IL13RA1P78552 427 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 SSBP1Q04837 148 aaKnown RBP20.85■□□□□ 0.93
SHMT1-207ENST00000580002 DYRK1AQ13627 763 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 ZNF880Q6PDB4 577 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 CEACAM18A8MTB9 384 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 RAB3DO95716 219 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 CD74P04233 296 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 ZNF735P0CB33 412 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 EDDM3BP56851 147 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 TAS2R19P59542 299 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 RGS21Q2M5E4 152 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 SLC6A7Q99884 636 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 MCUBQ9NWR8 336 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 TRAPPC2LQ9UL33 140 aa20.85■□□□□ 0.93
SHMT1-207ENST00000580002 MEIKINA0A087WXM9 373 aa20.84■□□□□ 0.93
SHMT1-207ENST00000580002 MGST3O14880 152 aa20.84■□□□□ 0.93
SHMT1-207ENST00000580002 AKAIN1P0CW23 69 aa20.84■□□□□ 0.93
SHMT1-207ENST00000580002 ATP5J2P56134 94 aa20.84■□□□□ 0.93
SHMT1-207ENST00000580002 IGSF11Q5DX21 431 aa20.84■□□□□ 0.93
SHMT1-207ENST00000580002 SLC35E4Q6ICL7 350 aa20.84■□□□□ 0.93
SHMT1-207ENST00000580002 OR13A1Q8NGR1 328 aa20.84■□□□□ 0.93
SHMT1-207ENST00000580002 TAS2R8Q9NYW2 309 aa20.84■□□□□ 0.93
SHMT1-207ENST00000580002 ANXA10Q9UJ72 324 aa20.84■□□□□ 0.93
SHMT1-207ENST00000580002 TMEM30CPA0ZSE6 113 aa20.83■□□□□ 0.93
SHMT1-207ENST00000580002 NKX6-3A6NJ46 265 aa20.83■□□□□ 0.93
SHMT1-207ENST00000580002 DVL1O14640 695 aa20.83■□□□□ 0.93
SHMT1-207ENST00000580002 TMEM33P57088 247 aa20.83■□□□□ 0.93
SHMT1-207ENST00000580002 DEFA1P59665 94 aa20.83■□□□□ 0.93
SHMT1-207ENST00000580002 DEFA3P59666 94 aa20.83■□□□□ 0.93
SHMT1-207ENST00000580002 SEC61A1P61619 476 aaKnown RBP20.83■□□□□ 0.93
SHMT1-207ENST00000580002 FAM53AQ6NSI3 398 aaPredicted RBP20.83■□□□□ 0.93
SHMT1-207ENST00000580002 PEG10Q86TG7 708 aaKnown RBP20.83■□□□□ 0.93
SHMT1-207ENST00000580002 HECTD1Q9ULT8 2610 aa20.83■□□□□ 0.92
SHMT1-207ENST00000580002 TRBV6-6A0A0A6YYG2 114 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 IGKV1-6A0A0C4DH72 117 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 NDUFB7P17568 137 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 GIFP27352 417 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 CENPSQ8N2Z9 138 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 MRGPRDQ8TDS7 321 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 RAB1CQ92928 201 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 SLC25A10Q9UBX3 287 aaPredicted RBP20.82■□□□□ 0.92
SHMT1-207ENST00000580002 CSMD1Q96PZ7 3565 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 GPR6P46095 362 aaPredicted RBP20.82■□□□□ 0.92
SHMT1-207ENST00000580002 AP3S2P59780 193 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 HERPUD1Q15011 391 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 PRR18Q8N4B5 295 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 OR5AP2Q8NGF4 316 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 OR51S1Q8NGJ8 323 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 MED30Q96HR3 178 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 MMP28Q9H239 520 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 ZNF286AQ9HBT8 521 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 KAAG1Q9UBP8 84 aa20.82■□□□□ 0.92
SHMT1-207ENST00000580002 MAP1AP78559 2803 aaPredicted RBP20.81■□□□□ 0.92
SHMT1-207ENST00000580002 OXA1LQ15070 435 aa20.81■□□□□ 0.92
SHMT1-207ENST00000580002 CHRFAM7AQ494W8 412 aa20.81■□□□□ 0.92
SHMT1-207ENST00000580002 ZNF841Q6ZN19 808 aa20.81■□□□□ 0.92
SHMT1-207ENST00000580002 SLC36A1Q7Z2H8 476 aa20.81■□□□□ 0.92
SHMT1-207ENST00000580002 TMPRSS13Q9BYE2 586 aa20.81■□□□□ 0.92
SHMT1-207ENST00000580002 DNTTIP1Q9H147 329 aa20.81■□□□□ 0.92
SHMT1-207ENST00000580002 RIMS4Q9H426 269 aaPredicted RBP20.81■□□□□ 0.92
SHMT1-207ENST00000580002 MBNL3Q9NUK0 354 aaKnown RBP20.81■□□□□ 0.92
SHMT1-207ENST00000580002 ODAMA1E959 279 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 AMY2AP04746 511 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 KCNJ3P48549 501 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 P2RX3P56373 397 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 RNASE10Q5GAN6 216 aaKnown RBP20.8■□□□□ 0.92
SHMT1-207ENST00000580002 TCF23Q7RTU1 214 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 OR5H2Q8NGV7 314 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 PPP1R35Q8TAP8 253 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 TIMD4Q96H15 378 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 BPESC1Q9GZL8 116 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 ZNF107Q9UII5 783 aaPredicted RBP20.8■□□□□ 0.92
SHMT1-207ENST00000580002 EDARQ9UNE0 448 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 A0A1B0GVG6 124 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 TRDCB7Z8K6 153 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 SLC6A1P30531 599 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 PLA1AQ53H76 456 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 OR5D13Q8NGL4 314 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 RFESDQ8TAC1 157 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 CHPT1Q8WUD6 406 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 FAM234AQ9H0X4 552 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 TAF9BQ9HBM6 251 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 C19orf12Q9NSK7 152 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 EHFQ9NZC4 300 aa20.8■□□□□ 0.92
SHMT1-207ENST00000580002 FABP7O15540 132 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 NDUFB3O43676 98 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 FSTL3O95633 263 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 WNT2P09544 360 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 SSTR5P35346 364 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 ARPC4P59998 168 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 ZNF782Q6ZMW2 699 aaPredicted RBP20.79■□□□□ 0.92
SHMT1-207ENST00000580002 OVCH2Q7RTZ1 564 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 OR1L1Q8NH94 360 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 MRGPRFQ96AM1 343 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 MED13LQ71F56 2210 aa20.79■□□□□ 0.92
SHMT1-207ENST00000580002 MALRD1Q5VYJ5 2156 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 C12orf77C9JDV5 145 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 NDUFA2O43678 99 aa20.78■□□□□ 0.92
SHMT1-207ENST00000580002 RPS2P15880 293 aaKnown RBP20.78■□□□□ 0.92
SHMT1-207ENST00000580002 GLP1RP43220 463 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms