RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SLC35A1P78382 337 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 PAX8Q06710 450 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 ARFRP1Q13795 201 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 KIR2DS1Q14954 304 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 TRIP13Q15645 432 aaPredicted RBP4.29□□□□□ -1.72
VPS53-219ENST00000576019 UAP1Q16222 522 aaPredicted RBP4.29□□□□□ -1.72
VPS53-219ENST00000576019 TMEM249Q2WGJ8 235 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 KPRPQ5T749 579 aaPredicted RBP4.29□□□□□ -1.72
VPS53-219ENST00000576019 THOC7Q6I9Y2 204 aaKnown RBP4.29□□□□□ -1.72
VPS53-219ENST00000576019 MOB1BQ7L9L4 216 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 SLC25A42Q86VD7 318 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 ENTHD1Q8IYW4 607 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 ZNF786Q8N393 782 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 NPWQ8N729 165 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 OR1N2Q8NGR9 330 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 OR10J6PQ8NGY7 276 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 OR10G6Q8NH81 332 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 DYNC2LI1Q8TCX1 351 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 ZFP90Q8TF47 636 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 PDXPQ96GD0 296 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 VSIG2Q96IQ7 327 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 VAT1Q99536 393 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 CCL28Q9NRJ3 127 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 AP3M1Q9Y2T2 418 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 YLPM1P49750 1951 aaKnown RBP4.29□□□□□ -1.72
VPS53-219ENST00000576019 RAI1Q7Z5J4 1906 aaPredicted RBP4.29□□□□□ -1.72
VPS53-219ENST00000576019 IGHV2OR16-5A0A0B4J2B6 119 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 XKRYO14609 159 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 GPR171O14626 319 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 SULT1B1O43704 296 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 GALR3O60755 368 aaPredicted RBP4.28□□□□□ -1.72
VPS53-219ENST00000576019 OR5F1O95221 314 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 TTC4O95801 387 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 TNFP01375 233 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 PRB2P02812 416 aaPredicted RBP4.28□□□□□ -1.72
VPS53-219ENST00000576019 CTSLP07711 333 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 OCM2P0CE71 109 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 ZNF7P17097 686 aaPredicted RBP4.28□□□□□ -1.72
VPS53-219ENST00000576019 PVALBP20472 110 aaPredicted RBP4.28□□□□□ -1.72
VPS53-219ENST00000576019 ANOS1P23352 680 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 GGT2P36268 569 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 ACTBP60709 375 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 IRX1P78414 480 aaPredicted RBP4.28□□□□□ -1.72
VPS53-219ENST00000576019 IL5RAQ01344 420 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 PIGGQ5H8A4 983 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 DRAM2Q6UX65 266 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 NR2C2APQ86WQ0 139 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 GPR26Q8NDV2 337 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 CCL4L1Q8NHW4 92 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 PATE1Q8WXA2 126 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 YIPF6Q96EC8 236 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 NICN1Q9BSH3 213 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 YTHDF1Q9BYJ9 559 aaKnown RBP4.28□□□□□ -1.72
VPS53-219ENST00000576019 SLCO1B3Q9NPD5 702 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 CD274Q9NZQ7 290 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 TFR2Q9UP52 801 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 MED12Q93074 2177 aa4.28□□□□□ -1.72
VPS53-219ENST00000576019 A0A096LNT2 108 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 A0A0D9SFI3 127 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 FGF16O43320 207 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 VAMP5O95183 116 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 CFC1BP0CG36 223 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 CFC1P0CG37 223 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 ERGP11308 486 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 MLNP12872 115 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 COX7A1P24310 79 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 GDF1P27539 372 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 MYCNOSP40205 109 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 NDUFA8P51970 172 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 CLDN12P56749 244 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 ARG2P78540 354 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 CD164Q04900 197 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 SLC25A35Q3KQZ1 300 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 SLC36A2Q495M3 483 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 COX19Q49B96 90 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 BLIDQ8IZY5 108 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 RPRMLQ8N4K4 120 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 RNF133Q8WVZ7 376 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 GTSF1Q8WW33 167 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 CREB3L1Q96BA8 519 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 TMA16Q96EY4 203 aaKnown RBP4.27□□□□□ -1.73
VPS53-219ENST00000576019 PPP1R36Q96LQ0 422 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 TMEM56Q96MV1 263 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 DERL2Q9GZP9 239 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 SLIRPQ9GZT3 109 aaKnown RBP4.27□□□□□ -1.73
VPS53-219ENST00000576019 SLC25A22Q9H936 323 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 TMEM100Q9NV29 134 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 ZNF257Q9Y2Q1 563 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 DMBT1Q9UGM3 2413 aaPredicted RBP4.27□□□□□ -1.73
VPS53-219ENST00000576019 CHD5Q8TDI0 1954 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 PLCE1Q9P212 2302 aa4.27□□□□□ -1.73
VPS53-219ENST00000576019 OR6C70A6NIJ9 312 aa4.26□□□□□ -1.73
VPS53-219ENST00000576019 C9J4A7 227 aa4.26□□□□□ -1.73
VPS53-219ENST00000576019 FTCDNL1E5RQL4 147 aa4.26□□□□□ -1.73
VPS53-219ENST00000576019 H0Y980 276 aa4.26□□□□□ -1.73
VPS53-219ENST00000576019 KMOO15229 486 aa4.26□□□□□ -1.73
VPS53-219ENST00000576019 FAM189A1O60320 539 aa4.26□□□□□ -1.73
VPS53-219ENST00000576019 ZNF432O94892 652 aa4.26□□□□□ -1.73
VPS53-219ENST00000576019 GNAO1P09471 354 aa4.26□□□□□ -1.73
VPS53-219ENST00000576019 NUP107P57740 925 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 125.1 ms