RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 MFAP2P55001 183 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 TATDN3Q17R31 274 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 ANKRD42Q8N9B4 389 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 OR52J3Q8NH60 311 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 THEM6Q8WUY1 208 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 HSH2DQ96JZ2 352 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 DGCR6LQ9BY27 220 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 SLA2Q9H6Q3 261 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 ADAM30Q9UKF2 790 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 MYRFQ9Y2G1 1151 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 TRBV2A0A0J9YWF9 115 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 FAM220BPB1ANY3 271 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 SH2D1BO14796 132 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 IL1AP01583 271 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 CALCBP10092 127 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 PRKACAP17612 351 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 GSTT1P30711 240 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 APOC4P55056 127 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 NDPQ00604 133 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 DYRK1AQ13627 763 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 GUCA2BQ16661 112 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 ZNF565Q8N9K5 539 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 OR2T12Q8NG77 320 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 OTOSQ8NHW6 89 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 RP9Q8TA86 221 aaKnown RBP11.98□□□□□ -0.49
VPS53-218ENST00000575207 FUZQ9BT04 418 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 CST11Q9H112 138 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 PPIL3Q9H2H8 161 aaKnown RBP11.98□□□□□ -0.49
VPS53-218ENST00000575207 EXOSC4Q9NPD3 245 aaKnown RBP11.98□□□□□ -0.49
VPS53-218ENST00000575207 FAM206AQ9NX38 181 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 CNOT2Q9NZN8 540 aaKnown RBP11.98□□□□□ -0.49
VPS53-218ENST00000575207 FAM32AQ9Y421 112 aaKnown RBP11.98□□□□□ -0.49
VPS53-218ENST00000575207 NUBP2Q9Y5Y2 271 aa11.98□□□□□ -0.49
VPS53-218ENST00000575207 IGKV1-27A0A075B6S5 117 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 TMEM269A0A1B0GVZ9 245 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 C11orf94C9JXX5 98 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 MAGEB3O15480 346 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 RGS16O15492 202 aaPredicted RBP11.97□□□□□ -0.49
VPS53-218ENST00000575207 OR2A4O95047 310 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 HTR1FP30939 366 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 ATXN7L3Q14CW9 347 aaPredicted RBP11.97□□□□□ -0.49
VPS53-218ENST00000575207 LRRC36Q1X8D7 754 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 DEFB114Q30KQ6 69 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 FAHD1Q6P587 224 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 CD200R1LQ6Q8B3 271 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 DHRS1Q96LJ7 313 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 ANKRD60Q9BZ19 345 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 PBOV1Q9GZY1 135 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 EGLN3Q9H6Z9 239 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 A3GALT2U3KPV4 340 aa11.97□□□□□ -0.49
VPS53-218ENST00000575207 ANKRD34BA5PLL1 514 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 A6NIN4 97 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 NPIPB11E5RHQ5 1161 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 J3QL48 77 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 LGALS9O00182 355 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 AIREO43918 545 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 BCL3P20749 454 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 CD40LGP29965 261 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 SERTAD4-AS1Q5TG53 156 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 OR13A1Q8NGR1 328 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 RFESDQ8TAC1 157 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 PEMTQ9UBM1 199 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 GSTK1Q9Y2Q3 226 aa11.96□□□□□ -0.49
VPS53-218ENST00000575207 TMEM120BA0PK00 339 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 FXYD1O00168 92 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 MITFO75030 526 aaPredicted RBP11.95□□□□□ -0.5
VPS53-218ENST00000575207 P0DMU3 169 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 FAM231AP0DMU4 169 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 FAM231CP0DMU5 169 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 C21orf33P30042 268 aaPredicted RBP11.95□□□□□ -0.5
VPS53-218ENST00000575207 VHLP40337 213 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 GSSP48637 474 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 ACTBL2Q562R1 376 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 LIN54Q6MZP7 749 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 LINC00311Q8N616 119 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 OR10A7Q8NGE5 316 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 C16orf45Q96MC5 204 aaPredicted RBP11.95□□□□□ -0.5
VPS53-218ENST00000575207 TMEM109Q9BVC6 243 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 C11orf68Q9H3H3 251 aaKnown RBP11.95□□□□□ -0.5
VPS53-218ENST00000575207 NDUFAF4Q9P032 175 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 CDH10Q9Y6N8 788 aa11.95□□□□□ -0.5
VPS53-218ENST00000575207 IGHV4-4A0A075B6R2 117 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 TXNL1O43396 289 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 TRGV3P03979 118 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 EGR2P11161 476 aaPredicted RBP11.94□□□□□ -0.5
VPS53-218ENST00000575207 IL3RAP26951 378 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 ALDH3A2P51648 485 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 TNP2Q05952 138 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 TMEM267Q0VDI3 215 aaPredicted RBP11.94□□□□□ -0.5
VPS53-218ENST00000575207 C1orf134Q5TEV5 83 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 ZNF660Q6AZW8 331 aaPredicted RBP11.94□□□□□ -0.5
VPS53-218ENST00000575207 RPL13AP3Q6NVV1 102 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 KLHDC2Q9Y2U9 406 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 V9GYS6 101 aa11.94□□□□□ -0.5
VPS53-218ENST00000575207 MEIKINA0A087WXM9 373 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 KIR2DL5BA0A0G2JN68 375 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 KIR2DL5BA0A0G2JPC4 375 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 C13orf42A0A1B0GVH6 325 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 ZNF44P15621 663 aa11.93□□□□□ -0.5
VPS53-218ENST00000575207 SCN1BQ07699 218 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms