RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SLC25A19Q9HC21 320 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 PARP11Q9NR21 331 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 SAR1AQ9NR31 198 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 V9GYQ6 96 aa13.73□□□□□ -0.21
CLK3-227ENST00000570296 A0A1W2PPE3 182 aa13.72□□□□□ -0.21
CLK3-227ENST00000570296 NPIPB11E5RHQ5 1161 aa13.72□□□□□ -0.21
CLK3-227ENST00000570296 SLC2A2P11168 524 aaPredicted RBP13.72□□□□□ -0.21
CLK3-227ENST00000570296 C21orf33P30042 268 aaPredicted RBP13.72□□□□□ -0.21
CLK3-227ENST00000570296 HMGA2P52926 109 aa13.72□□□□□ -0.21
CLK3-227ENST00000570296 GYS2P54840 703 aa13.72□□□□□ -0.21
CLK3-227ENST00000570296 BCL2L15Q5TBC7 163 aa13.72□□□□□ -0.21
CLK3-227ENST00000570296 Q8N402 240 aa13.72□□□□□ -0.21
CLK3-227ENST00000570296 RTN4IP1Q8WWV3 396 aaPredicted RBP13.72□□□□□ -0.21
CLK3-227ENST00000570296 YIPF3Q9GZM5 350 aa13.72□□□□□ -0.21
CLK3-227ENST00000570296 GTF2A1LQ9UNN4 478 aa13.72□□□□□ -0.21
CLK3-227ENST00000570296 LOC110117498-PIK3R3F6TDL0 507 aa13.71□□□□□ -0.21
CLK3-227ENST00000570296 SRSF10O75494 262 aaKnown RBP13.71□□□□□ -0.21
CLK3-227ENST00000570296 FABP3P05413 133 aa13.71□□□□□ -0.21
CLK3-227ENST00000570296 ZNF44P15621 663 aa13.71□□□□□ -0.21
CLK3-227ENST00000570296 CCL1P22362 96 aa13.71□□□□□ -0.21
CLK3-227ENST00000570296 HTR1FP30939 366 aa13.71□□□□□ -0.21
CLK3-227ENST00000570296 HCCSP53701 268 aa13.71□□□□□ -0.21
CLK3-227ENST00000570296 LTC4SQ16873 150 aa13.71□□□□□ -0.21
CLK3-227ENST00000570296 OR13A1Q8NGR1 328 aa13.71□□□□□ -0.21
CLK3-227ENST00000570296 RGP1Q92546 391 aaPredicted RBP13.71□□□□□ -0.21
CLK3-227ENST00000570296 KCTD12Q96CX2 325 aaKnown RBP13.71□□□□□ -0.21
CLK3-227ENST00000570296 SIGLEC8Q9NYZ4 499 aa13.71□□□□□ -0.21
CLK3-227ENST00000570296 PRR32B1ATL7 298 aa13.7□□□□□ -0.22
CLK3-227ENST00000570296 ZNF736B4DX44 427 aaPredicted RBP13.7□□□□□ -0.22
CLK3-227ENST00000570296 SLC33A1O00400 549 aaPredicted RBP13.7□□□□□ -0.22
CLK3-227ENST00000570296 TPPPO94811 219 aa13.7□□□□□ -0.22
CLK3-227ENST00000570296 HLA-DRB1P01911 266 aa13.7□□□□□ -0.22
CLK3-227ENST00000570296 ATP1B3P54709 279 aa13.7□□□□□ -0.22
CLK3-227ENST00000570296 SLC35D3Q5M8T2 416 aa13.7□□□□□ -0.22
CLK3-227ENST00000570296 C8orf82Q6P1X6 216 aaPredicted RBP13.7□□□□□ -0.22
CLK3-227ENST00000570296 LINC00336Q6ZUF6 198 aa13.7□□□□□ -0.22
CLK3-227ENST00000570296 ASB17Q8WXJ9 295 aa13.7□□□□□ -0.22
CLK3-227ENST00000570296 CHST5Q9GZS9 411 aa13.7□□□□□ -0.22
CLK3-227ENST00000570296 MEIKINA0A087WXM9 373 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 IGHV7-81A0A0B4J1V7 117 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 A0A1B0GVY2 172 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 TXNL1O43396 289 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 SOX15O60248 233 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 GMNNO75496 209 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 IGHV3-11P01762 117 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 ZP3P21754 424 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 IL3RAP26951 378 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 BLVRBP30043 206 aaPredicted RBP13.69□□□□□ -0.22
CLK3-227ENST00000570296 RBP2P50120 134 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 CD81P60033 236 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 SCN1BQ07699 218 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 APOFQ13790 326 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 C19orf54Q5BKX5 351 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 Q6P435 159 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 IL34Q6ZMJ4 242 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 LINC00311Q8N616 119 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 AQP11Q8NBQ7 271 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 DNAAF1Q8NEP3 725 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 OR51T1Q8NGJ9 327 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 RFESDQ8TAC1 157 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 FAM107BQ9H098 131 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 GORASP2Q9H8Y8 452 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 PLA2G2EQ9NZK7 142 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 KIF25Q9UIL4 384 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 OR52A1Q9UKL2 312 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 IKZF2Q9UKS7 526 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 FOXA2Q9Y261 457 aaPredicted RBP13.69□□□□□ -0.22
CLK3-227ENST00000570296 ERGIC3Q9Y282 383 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 R4GMQ9 66 aa13.69□□□□□ -0.22
CLK3-227ENST00000570296 A0A1W2PN81 502 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 TNFRSF11BO00300 401 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 CCNB2O95067 398 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 SERPINA3P01011 423 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 CHRNA7P36544 502 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 MMDQ15546 238 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 PYHIN1Q6K0P9 492 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 IQCF1Q8N6M8 205 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 TCTEX1D1Q8N7M0 179 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 C8orf31Q8N9H6 132 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 OR9G4Q8NGQ1 327 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 TEX47Q8TBZ9 253 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 SPACA5Q96QH8 159 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 DGCR6LQ9BY27 220 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 ETAA1Q9NY74 926 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 ABCD2Q9UBJ2 740 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 TMEM14AQ9Y6G1 99 aa13.68□□□□□ -0.22
CLK3-227ENST00000570296 HSPG2P98160 4391 aa13.67□□□□□ -0.22
CLK3-227ENST00000570296 CRIP2P52943 208 aaPredicted RBP13.67□□□□□ -0.22
CLK3-227ENST00000570296 RPS7P62081 194 aaKnown RBP13.67□□□□□ -0.22
CLK3-227ENST00000570296 LAX1Q8IWV1 398 aa13.67□□□□□ -0.22
CLK3-227ENST00000570296 CASTOR1Q8WTX7 329 aa13.67□□□□□ -0.22
CLK3-227ENST00000570296 RHOVQ96L33 236 aa13.67□□□□□ -0.22
CLK3-227ENST00000570296 NEURL2Q9BR09 285 aa13.67□□□□□ -0.22
CLK3-227ENST00000570296 OVOL2Q9BRP0 275 aa13.67□□□□□ -0.22
CLK3-227ENST00000570296 CST11Q9H112 138 aa13.67□□□□□ -0.22
CLK3-227ENST00000570296 RHOFQ9HBH0 211 aa13.67□□□□□ -0.22
CLK3-227ENST00000570296 SNX5Q9Y5X3 404 aa13.67□□□□□ -0.22
CLK3-227ENST00000570296 NDUFB8O95169 186 aa13.66□□□□□ -0.22
CLK3-227ENST00000570296 ATF4P18848 351 aaPredicted RBP13.66□□□□□ -0.22
CLK3-227ENST00000570296 SSTR5P35346 364 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms