RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CDK2P24941 298 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 RPL31P62899 125 aaKnown RBP7.62□□□□□ -1.19
VPS35-211ENST00000569950 EDDM3AQ14507 147 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 ZNF260Q3ZCT1 412 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 ATAD3CQ5T2N8 411 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 SLC35E4Q6ICL7 350 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 FAM53AQ6NSI3 398 aaPredicted RBP7.62□□□□□ -1.19
VPS35-211ENST00000569950 BAIAP2L2Q6UXY1 529 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 SAMD12Q8N8I0 201 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 DTX3Q8N9I9 347 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 OR5D13Q8NGL4 314 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 DGCR14Q96DF8 476 aaKnown RBP7.62□□□□□ -1.19
VPS35-211ENST00000569950 DMRTB1Q96MA1 342 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 NUDT16L1Q9BRJ7 211 aaKnown RBP7.62□□□□□ -1.19
VPS35-211ENST00000569950 MBNL3Q9NUK0 354 aaKnown RBP7.62□□□□□ -1.19
VPS35-211ENST00000569950 AK3Q9UIJ7 227 aa7.62□□□□□ -1.19
VPS35-211ENST00000569950 IGKV1D-8A0A087WSZ0 117 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 TRBV6-6A0A0A6YYG2 114 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 NPIPB11E5RHQ5 1161 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 ENSAO43768 121 aaKnown RBP7.61□□□□□ -1.19
VPS35-211ENST00000569950 HLA-DQB1P01920 261 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 APOA1P02647 267 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 HEXAP06865 529 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 MELTFP08582 738 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 PPIAL4GP0DN37 164 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 GNB3P16520 340 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 RCC1P18754 421 aaPredicted RBP7.61□□□□□ -1.19
VPS35-211ENST00000569950 KCNJ3P48549 501 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 PRB3Q04118 309 aaPredicted RBP7.61□□□□□ -1.19
VPS35-211ENST00000569950 MEF2CQ06413 473 aaPredicted RBP7.61□□□□□ -1.19
VPS35-211ENST00000569950 KRBOX4Q5JUW0 171 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 UBE2NLQ5JXB2 153 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 NKAPLQ5M9Q1 402 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 CD276Q5ZPR3 534 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 GDPD3Q7L5L3 318 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 LAX1Q8IWV1 398 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 KIR3DL3Q8N743 410 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 OR56B1Q8NGI3 324 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 ACOT12Q8WYK0 555 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 H1FXQ92522 213 aaKnown RBP7.61□□□□□ -1.19
VPS35-211ENST00000569950 UPRTQ96BW1 309 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 AJUBAQ96IF1 538 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 CMTM3Q96MX0 182 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 SOSTQ9BQB4 213 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 DCUN1D5Q9BTE7 237 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 URM1Q9BTM9 101 aaKnown RBP7.61□□□□□ -1.19
VPS35-211ENST00000569950 ATG5Q9H1Y0 275 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 UNKLQ9H9P5 680 aaKnown RBP7.61□□□□□ -1.19
VPS35-211ENST00000569950 ZMAT3Q9HA38 289 aaKnown RBP7.61□□□□□ -1.19
VPS35-211ENST00000569950 SPACA1Q9HBV2 294 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 NDUFA13Q9P0J0 144 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 COMMD3Q9UBI1 195 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 GLS2Q9UI32 602 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 LINC00312Q9Y6C7 94 aa7.61□□□□□ -1.19
VPS35-211ENST00000569950 TMEM235A6NFC5 223 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 RNASEK-C17orf49H0YIS7 233 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 XRCC3O43542 346 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 LIPFP07098 398 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 SSTR5P35346 364 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 EDDM3BP56851 147 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 ARF6P62330 175 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 LDLRAD2Q5SZI1 272 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 C1orf122Q6ZSJ8 110 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 Q6ZTK2 550 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 Q71RC1 249 aaPredicted RBP7.6□□□□□ -1.19
VPS35-211ENST00000569950 GLCCI1Q86VQ1 547 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 IZUMO1Q8IYV9 350 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 FAM185AQ8N0U4 392 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 OR4K15Q8NH41 348 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 GCDHQ92947 438 aaPredicted RBP7.6□□□□□ -1.19
VPS35-211ENST00000569950 RAB3CQ96E17 227 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 WDFY2Q96P53 400 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 AUNIPQ9H7T9 357 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 ING3Q9NXR8 418 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 ETAA1Q9NY74 926 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 SOX21Q9Y651 276 aaPredicted RBP7.6□□□□□ -1.19
VPS35-211ENST00000569950 KPTNQ9Y664 436 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 ATRQ13535 2644 aa7.6□□□□□ -1.19
VPS35-211ENST00000569950 TRAV18A0A075B6X5 111 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 MEIKINA0A087WXM9 373 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 A0A0A6YYH2 397 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 IGKV1-6A0A0C4DH72 117 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 TMEM30CPA0ZSE6 113 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 MEIOCA2RUB1 952 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 CCDC160A6NGH7 325 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 A6NJ64 397 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 C12orf77C9JDV5 145 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 MCRIP1C9JLW8 97 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 J3QLI3 93 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 M0R1W7 72 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 CA11O75493 328 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 ZNF728P0DKX0 622 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 IGHV4-38-2P0DP08 117 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 HOXB4P17483 251 aaPredicted RBP7.59□□□□□ -1.19
VPS35-211ENST00000569950 GATA3P23771 443 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 MNDAP41218 407 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 LOXL3P58215 753 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 TAS2R20P59543 309 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 GUCA2AQ02747 115 aa7.59□□□□□ -1.19
VPS35-211ENST00000569950 HERPUD1Q15011 391 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms