RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 TUSC2O75896 110 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 IGKV1-13P0DP09 117 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 WDR25Q64LD2 544 aaPredicted RBP12.5□□□□□ -0.41
VPS35-210ENST00000568784 SLC23A3Q6PIS1 610 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 WDR74Q6RFH5 385 aaPredicted RBP12.5□□□□□ -0.41
VPS35-210ENST00000568784 NABP1Q96AH0 204 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 ROS1P08922 2347 aa12.5□□□□□ -0.41
VPS35-210ENST00000568784 HLA-DRB3P79483 266 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 C1orf87Q8N0U7 546 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 CHRNA10Q9GZZ6 450 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 OR14J1Q9UGF5 321 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 HBE1P02100 147 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 LIFP15018 202 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 HPSE2Q8WWQ2 592 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 EDARADDQ8WWZ3 215 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 CACNG5Q9UF02 275 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 A0A0U1RQK1 487 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 HOXB1P14653 301 aaPredicted RBP12.49□□□□□ -0.41
VPS35-210ENST00000568784 OR10D3Q8NH80 312 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 SNIP1Q8TAD8 396 aaKnown RBP12.49□□□□□ -0.41
VPS35-210ENST00000568784 C18orf12Q96KH6 178 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 TMEM38BQ9NVV0 291 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 KIAA1456Q9P272 454 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 RNF150Q9ULK6 438 aa12.49□□□□□ -0.41
VPS35-210ENST00000568784 NOSIPQ9Y314 301 aaKnown RBP12.49□□□□□ -0.41
VPS35-210ENST00000568784 A0A0G2JMM0 328 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 A0A1W2PPB8 328 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 A0A1W2PRS3 328 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 KIR3DP1A8MWS1 328 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 CLDN1O95832 211 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 SRP19P09132 144 aaKnown RBP12.48□□□□□ -0.41
VPS35-210ENST00000568784 CLDN15P56746 228 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 ZXDAP98168 799 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 GAMTQ14353 236 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 LPAL2Q16609 132 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 HS3ST6Q96QI5 342 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 HS3ST3B1Q9Y662 390 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 GJE1A6NN92 205 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 PROB1E7EW31 1015 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 CDS2O95674 445 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 PGA5P0DJD9 388 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 MLF1P58340 268 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 PMP22Q01453 160 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 KCNMB1Q16558 191 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 HEPN1Q6WQI6 88 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 TAAR9Q96RI9 348 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 LAMP3Q9UQV4 416 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 CDX1P47902 265 aaPredicted RBP12.48□□□□□ -0.41
VPS35-210ENST00000568784 RAC1P63000 192 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 PRDX4Q13162 271 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 CRIP3Q6Q6R5 217 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 SELENOHQ8IZQ5 122 aaKnown RBP12.48□□□□□ -0.41
VPS35-210ENST00000568784 CADM4Q8NFZ8 388 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 OR10J5Q8NHC4 309 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 MUCL1Q96DR8 90 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 ADAMTS9Q9P2N4 1935 aa12.48□□□□□ -0.41
VPS35-210ENST00000568784 TRGC1P0CF51 173 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 PSG2P11465 335 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 LHX4Q969G2 390 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 SMIM7Q9BQ49 75 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 OR2H1Q9GZK4 316 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 SLC39A9Q9NUM3 307 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 A0A1W2PPQ1 181 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 TSTD3H0UI37 97 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 ZIC3O60481 467 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 CBR3O75828 277 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 VDAC1P21796 283 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 MCEMP1Q8IX19 187 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 ZIC4Q8N9L1 334 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 ANGPTL4Q9BY76 406 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 AURKAIP1Q9NWT8 199 aaPredicted RBP12.47□□□□□ -0.41
VPS35-210ENST00000568784 TINAGQ9UJW2 476 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 UBE2L5PA0A1B0GUS4 154 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 OR6C6A6NF89 314 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 SIRPB1O00241 398 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 PITX3O75364 302 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 CXCL12P48061 93 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 PCBD1P61457 104 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 ERVS71-1P61550 626 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 PSENENQ9NZ42 101 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 PRR14LQ5THK1 2151 aa12.47□□□□□ -0.41
VPS35-210ENST00000568784 SOX15O60248 233 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST1H2BKO60814 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST1H2BJP06899 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST1H2BOP23527 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST1H2BBP33778 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST1H2BDP58876 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST1H2BCP62807 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST2H2BEQ16778 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 SPINK9Q5DT21 86 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.46□□□□□ -0.41
VPS35-210ENST00000568784 C10orf128Q5T292 105 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 TMEM37Q8WXS4 190 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST1H2BHQ93079 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST1H2BNQ99877 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST1H2BMQ99879 126 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 TUBA4BQ9H853 241 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 LYRM2Q9NU23 88 aaPredicted RBP12.46□□□□□ -0.41
VPS35-210ENST00000568784 TRAPPC2LQ9UL33 140 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 FAM166BA8MTA8 275 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms