RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ARSBP15848 533 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 CDK2P24941 298 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 GP2P55259 537 aaKnown RBP10.59□□□□□ -0.71
CLK3-224ENST00000568605 DYNC1I2Q13409 638 aaKnown RBP10.59□□□□□ -0.71
CLK3-224ENST00000568605 RAB11BQ15907 218 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 RSBN1Q5VWQ0 802 aaPredicted RBP10.59□□□□□ -0.71
CLK3-224ENST00000568605 ZNF626Q68DY1 528 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 SLC35E4Q6ICL7 350 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 RAB12Q6IQ22 244 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 HCP5Q6MZN7 132 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 OR2W3Q7Z3T1 314 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 RTN4RL2Q86UN3 420 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 BEND2Q8NDZ0 799 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 OR11H6Q8NGC7 330 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 OR5R1Q8NH85 324 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 GCDHQ92947 438 aaPredicted RBP10.59□□□□□ -0.71
CLK3-224ENST00000568605 URM1Q9BTM9 101 aaKnown RBP10.59□□□□□ -0.71
CLK3-224ENST00000568605 STUB1Q9UNE7 303 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 AK6Q9Y3D8 172 aaKnown RBP10.59□□□□□ -0.71
CLK3-224ENST00000568605 SOX21Q9Y651 276 aaPredicted RBP10.59□□□□□ -0.71
CLK3-224ENST00000568605 V9GY05 133 aa10.59□□□□□ -0.71
CLK3-224ENST00000568605 FBN1P35555 2871 aaKnown RBP10.59□□□□□ -0.71
CLK3-224ENST00000568605 IGHV2-26A0A0B4J1V2 119 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 TRAV1-2A0A0B4J238 106 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 ODF3BA8MYP8 253 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 AIPO00170 330 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 CRYBA1P05813 215 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 GLAP06280 429 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 ARHGDIBP52566 201 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 NEDD8Q15843 81 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 FAM189A2Q15884 450 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 LRRC75BQ2VPJ9 315 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 PRAMEF5Q5TYX0 476 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 TRAT1Q6PIZ9 186 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 GDPGP1Q6ZNW5 385 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 TMEM104Q8NE00 496 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 PLPPR1Q8TBJ4 325 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 ZNF596Q8TC21 504 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 DYRK2Q92630 601 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 CREB3L1Q96BA8 519 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 ETAA1Q9NY74 926 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 CALYQ9NYX4 217 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 VPREB3Q9UKI3 123 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 SSR3Q9UNL2 185 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 PEX16Q9Y5Y5 336 aa10.58□□□□□ -0.72
CLK3-224ENST00000568605 A0A087WXM4 84 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 KBTBD11-OT1A0A1B0GTJ5 212 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 PDCD6O75340 191 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 IL1AP01583 271 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 VSIG8P0DPA2 414 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 RAB3BP20337 219 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 FUT3P21217 361 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 FGF9P31371 208 aaPredicted RBP10.57□□□□□ -0.72
CLK3-224ENST00000568605 IER3P46695 156 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 RPS27AP62979 156 aaKnown RBP10.57□□□□□ -0.72
CLK3-224ENST00000568605 AANATQ16613 207 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 TIMM50Q3ZCQ8 353 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 NKAPLQ5M9Q1 402 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 C6orf183Q5T699 404 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 SYT6Q5T7P8 510 aaPredicted RBP10.57□□□□□ -0.72
CLK3-224ENST00000568605 MINOS1Q5TGZ0 78 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 C16orf87Q6PH81 154 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 OR10A7Q8NGE5 316 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 OR13A1Q8NGR1 328 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 NDNFQ8TB73 568 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 MRGPRDQ8TDS7 321 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 NEDD4LQ96PU5 975 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 TNFRSF19Q9NS68 423 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 MINOS1-NBL1R4GNA1 71 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 STAB1Q9NY15 2570 aa10.57□□□□□ -0.72
CLK3-224ENST00000568605 A0A087X0M5 115 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 A0A1B0GX30 115 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 TMEM14DPA8MWL7 114 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 TOR1AO14656 332 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 IGHV4-59P01825 116 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 HKR1P10072 659 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 CD37P11049 281 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 GZMHP20718 246 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 NFYBP25208 207 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 CD34P28906 385 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 CEACAM3P40198 252 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 FOXL1Q12952 345 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 P2RY14Q15391 338 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 TMEM30BQ3MIR4 351 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 C22orf42Q6IC83 251 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 C12orf54Q6X4T0 127 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 ZNF497Q6ZNH5 498 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 TSPAN14Q8NG11 270 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 MALSU1Q96EH3 234 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 TM2D1Q9BX74 207 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 CHIAQ9BZP6 476 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 ABCB10Q9NRK6 738 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 IDI2-AS1Q9NZ38 188 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 STEAP1Q9UHE8 339 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 TRAPPC2LQ9UL33 140 aa10.56□□□□□ -0.72
CLK3-224ENST00000568605 AMMECR1Q9Y4X0 333 aaPredicted RBP10.56□□□□□ -0.72
CLK3-224ENST00000568605 TMEM89A2RUT3 159 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 OMGP23515 440 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 CFPP27918 469 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 HTR1DP28221 377 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms