RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ORC6Q9Y5N6 252 aa9.22□□□□□ -0.93
USP3-220ENST00000561381 GMPPBQ9Y5P6 360 aa9.22□□□□□ -0.93
USP3-220ENST00000561381 HSPE1-MOB4S4R3N1 261 aa9.22□□□□□ -0.93
USP3-220ENST00000561381 A0A1W2PPE3 182 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 PSMB11A5LHX3 300 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 TMEM212A6NML5 194 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 M0QZK8 103 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 GABRPO00591 440 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 IL1AP01583 271 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 SSTR5P35346 364 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 SOX2P48431 317 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 GNG10P50151 68 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 GTF2A1P52655 376 aaPredicted RBP9.21□□□□□ -0.94
USP3-220ENST00000561381 HNF4GQ14541 408 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 DEFB121Q5J5C9 76 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 RSBN1Q5VWQ0 802 aaPredicted RBP9.21□□□□□ -0.94
USP3-220ENST00000561381 C11orf87Q6NUJ2 197 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 ZNF529Q6P280 563 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 C5orf56Q8N8D9 126 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 LINC00482Q8N8I6 264 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 ZNF565Q8N9K5 539 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 PXT1Q8NFP0 134 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 OR5AK2Q8NH90 309 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 TNFAIP8L1Q8WVP5 186 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 TSEN15Q8WW01 171 aaKnown RBP9.21□□□□□ -0.94
USP3-220ENST00000561381 RGP1Q92546 391 aaPredicted RBP9.21□□□□□ -0.94
USP3-220ENST00000561381 LINC00574Q9H8X3 128 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 ERVK13-1Q9NX77 482 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 TAS2R4Q9NYW5 299 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 LINC00527Q9UJ94 153 aa9.21□□□□□ -0.94
USP3-220ENST00000561381 SNTNA6NMZ2 147 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 NPIPB11E5RHQ5 1161 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 TMEM11P17152 192 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 RAB3AP20336 220 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 HES1Q14469 280 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 XAF1Q6GPH4 301 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 FAM53AQ6NSI3 398 aaPredicted RBP9.2□□□□□ -0.94
USP3-220ENST00000561381 THNSL2Q86YJ6 484 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 MRPL41Q8IXM3 137 aaKnown RBP9.2□□□□□ -0.94
USP3-220ENST00000561381 OR52I1Q8NGK6 324 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 RHOXF1Q8NHV9 184 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 EDARADDQ8WWZ3 215 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 MRPL48Q96GC5 212 aaKnown RBP9.2□□□□□ -0.94
USP3-220ENST00000561381 GPER1Q99527 375 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 SLC29A1Q99808 456 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 BARHL1Q9BZE3 327 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 FAM192AQ9GZU8 254 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 AMMECR1Q9Y4X0 333 aaPredicted RBP9.2□□□□□ -0.94
USP3-220ENST00000561381 DNAH9Q9NYC9 4486 aa9.2□□□□□ -0.94
USP3-220ENST00000561381 IGHV3-72A0A0B4J1Y9 119 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 LINC01548A6NM66 108 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 CDRT1O95170 752 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 HTR3BO95264 441 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 CLIC3O95833 236 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 FADS2O95864 444 aaKnown RBP9.19□□□□□ -0.94
USP3-220ENST00000561381 IGKV1D-33P01593 117 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 IGKV1-33P01594 117 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 CCDC159P0C7I6 412 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 C21orf33P30042 268 aaPredicted RBP9.19□□□□□ -0.94
USP3-220ENST00000561381 REG1BP48304 166 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 GBX2P52951 348 aaPredicted RBP9.19□□□□□ -0.94
USP3-220ENST00000561381 RPL23AP62750 156 aaKnown RBP9.19□□□□□ -0.94
USP3-220ENST00000561381 EGFEM1PQ0D2K5 195 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 MADCAM1Q13477 382 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 IL13RA2Q14627 380 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 RSU1Q15404 277 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 VAX1Q5SQQ9 334 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 ASCL4Q6XD76 172 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 C8orf86Q6ZUL3 223 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 OR2W3Q7Z3T1 314 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 SUMF2Q8NBJ7 301 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 Q8NFD4 153 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 UBALD1Q8TB05 177 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 APH1BQ8WW43 257 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 ORAI1Q96D31 301 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 RBMXL1Q96E39 390 aaKnown RBP9.19□□□□□ -0.94
USP3-220ENST00000561381 DPCDQ9BVM2 203 aaPredicted RBP9.19□□□□□ -0.94
USP3-220ENST00000561381 JAM3Q9BX67 310 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 NCOR1P1Q9H4R4 102 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 PCDHB16Q9NRJ7 776 aa9.19□□□□□ -0.94
USP3-220ENST00000561381 SERPINE3A8MV23 424 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 MAGEB3O15480 346 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 DUS4LO95620 317 aaKnown RBP9.18□□□□□ -0.94
USP3-220ENST00000561381 RPSAP08865 295 aaKnown RBP9.18□□□□□ -0.94
USP3-220ENST00000561381 LIMS3P0CW19 117 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 LIMS4P0CW20 117 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 THBS3P49746 956 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 RAB7AP51149 207 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 PAX5Q02548 391 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 RAB40BQ12829 278 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 SMN1Q16637 294 aaKnown RBP9.18□□□□□ -0.94
USP3-220ENST00000561381 OR8H3Q8N146 312 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 OR10X1Q8NGY0 326 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 HAVCR2Q8TDQ0 301 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 CHPT1Q8WUD6 406 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 DUX3Q96PT4 197 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 MRPS18AQ9NVS2 196 aaKnown RBP9.18□□□□□ -0.94
USP3-220ENST00000561381 ING4Q9UNL4 249 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 ST3GAL6Q9Y274 331 aa9.18□□□□□ -0.94
USP3-220ENST00000561381 SIRT4Q9Y6E7 314 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms