RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	KIF25	Q9UIL4	384 aa		11.3	□□□□□ -0.6
TPM1-223	ENST00000560445	ST3GAL6	Q9Y274	331 aa		11.3	□□□□□ -0.6
TPM1-223	ENST00000560445	MYL12B	O14950	172 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	OGG1	O15527	345 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	MMP23A	O75900	390 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	ETV1	P50549	477 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	GTF2A1	P52655	376 aa	Predicted RBP	11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	RBM11	P57052	281 aa	Known RBP	11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	NSUN5P1	Q3KNT7	163 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	LDLRAD2	Q5SZI1	272 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	OR10X1	Q8NGY0	326 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	NEK7	Q8TDX7	302 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	CNOT2	Q9NZN8	540 aa	Known RBP	11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	ING4	Q9UNL4	249 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	MOB4	Q9Y3A3	225 aa		11.29	□□□□□ -0.6
TPM1-223	ENST00000560445	TRAV24	A0A0B4J272	114 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445		J3QR06	171 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	GPX5	O75715	221 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	PF4V1	P10720	104 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	FST	P19883	344 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	CAPG	P40121	348 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	ADARB1	P78563	741 aa	Known RBP	11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	HABP2	Q14520	560 aa	Predicted RBP	11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	C17orf58	Q2M2W7	97 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	PIGY	Q3MUY2	71 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445		Q3ZCU0	254 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	OR2G6	Q5TZ20	316 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	RSBN1	Q5VWQ0	802 aa	Predicted RBP	11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	TRAT1	Q6PIZ9	186 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	NKAIN3	Q8N8D7	197 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	SUMF2	Q8NBJ7	301 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	OR5AU1	Q8NGC0	362 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	OR52M1	Q8NGK5	317 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	GHSR	Q92847	366 aa		11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	CITED2	Q99967	270 aa	Predicted RBP	11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	PPIL3	Q9H2H8	161 aa	Known RBP	11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	TSSC4	Q9Y5U2	329 aa	Predicted RBP	11.28	□□□□□ -0.6
TPM1-223	ENST00000560445	NPIPB11	E5RHQ5	1161 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	CA11	O75493	328 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	CD28	P10747	220 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	BLCAP	P62952	87 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	ST3GAL4	Q11206	333 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	KPRP	Q5T749	579 aa	Predicted RBP	11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	DMKN	Q6E0U4	476 aa	Predicted RBP	11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	C8orf31	Q8N9H6	132 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	OR13A1	Q8NGR1	328 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	MRGPRD	Q8TDS7	321 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	RGP1	Q92546	391 aa	Predicted RBP	11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	OR5M11	Q96RB7	305 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	ZNF184	Q99676	751 aa	Predicted RBP	11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	GPR61	Q9BZJ8	451 aa		11.27	□□□□□ -0.61
TPM1-223	ENST00000560445	TRBV5-5	A0A0J9YX44	114 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM172BP	A6NC97	362 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A10P	A6NDY2	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A18P	A6NE21	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A16P	A6NEW6	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A20P	A6NIJ5	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A7P	A6NKC0	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A12P	A8MX19	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A5P	A8MXJ8	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A23P	A8MXZ1	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	MCRIP1	C9JLW8	97 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	LY6L	H3BQJ8	138 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	SPINT2	O43291	252 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FGF16	O43320	207 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	TXNL1	O43396	289 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	ORC5	O43913	435 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	CDRT1	O95170	752 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	DUS4L	O95620	317 aa	Known RBP	11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	PF4	P02776	101 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	CD1A	P06126	327 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A15P	P0C7V4	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A13P	P0C7W8	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A14P	P0C7W9	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	FAM90A24P	P0C7X0	464 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	CGB3	P0DN86	165 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	CGB7	P0DN87	165 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	SERPINA2	P20848	420 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	SLC6A1	P30531	599 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	HES1	Q14469	280 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	SLC22A6	Q4U2R8	563 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	ABCA11P	Q4W5N1	156 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	ATAD3C	Q5T2N8	411 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	C6orf183	Q5T699	404 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	OGFRL1	Q5TC84	451 aa	Predicted RBP	11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	SAMD5	Q5TGI4	173 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	JAGN1	Q8N5M9	183 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	OR10K1	Q8NGX5	313 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	WIPF2	Q8TF74	440 aa	Predicted RBP	11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	GGH	Q92820	318 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	OCSTAMP	Q9BR26	566 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	DCLRE1B	Q9H816	532 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	GHRL	Q9UBU3	117 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	ERGIC3	Q9Y282	383 aa		11.26	□□□□□ -0.61
TPM1-223	ENST00000560445	TCRBV4S1A1T	A0A5B7	111 aa		11.25	□□□□□ -0.61
TPM1-223	ENST00000560445	AIP	O00170	330 aa		11.25	□□□□□ -0.61
TPM1-223	ENST00000560445	CCRL2	O00421	344 aa		11.25	□□□□□ -0.61
TPM1-223	ENST00000560445	PLXNB1	O43157	2135 aa		11.25	□□□□□ -0.61
TPM1-223	ENST00000560445	GAPDH	P04406	335 aa	Known RBP	11.25	□□□□□ -0.61
TPM1-223	ENST00000560445	GLA	P06280	429 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms